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Bos taurus breed:Canadian Hostein

ABSTRACT: Raw RNA-Seq reads from Canadian Holstein cows with Streptococcus mastitis

PROVIDER: PRJNA835097 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR21202918_1.fastq.gz	Fastqsanger.gz
	SRR21202918_2.fastq.gz	Fastqsanger.gz
	SRR21202919_1.fastq.gz	Fastqsanger.gz
	SRR21202919_2.fastq.gz	Fastqsanger.gz
	SRR21202920_1.fastq.gz	Fastqsanger.gz

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Project description:Liver plays a profound role in the acute phase response (APR) observed in the early phase of acute bovine mastitis caused by Escherichia coli (E. coli). To gain an insight into the genes and pathways involved in hepatic APR of dairy cows we performed a global gene expression analysis of liver tissue sampled at different time points before and after intra-mammary (IM) exposure to E. coli lipopolysaccharide (LPS) treatment. Experiment Overall Design: Eight healthy, high yielding Holstein-Friesian dairy cows in their first lactation (9 to 12 weeks after calving) were chosen for this study. At time 0 the right front quarter was infused with 200 Î¼g E. coli LPS dissolved in 10 ml 0.9% NaCl solution, the left front quarter serving as control was infused with 10 ml 0.9% NaCl solution. Liver biopsies were taken at â22, 3, 6, 9, 12 and 48 hours relative to LPS infusion in 4 cows, and also at â22, 9 and 48 hours in the remaining 4 cows. RNA from liver biopsies was isolated and biotin labeled cRNA was loaded onto the Affymetric GeneChip Bovine Genome Array. A control study using cows infused with 0.9% NaCl showed that there was no effect of taking the biopsy, neither in the clinical measurement nor in the expression of a selected subset of genes. Therefore, only samples taken from the LPS treated cows were measured for the gene expression using microarrays.

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Project description:Whole genome DNA methylation sequencing in relation to Staphylococcus chromogenes subclinical mastitis

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