Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Pioneer 100 Horse Health Project

PROVIDER: PRJNA841639 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR19364600_1.fastq.gz	Fastqsanger.gz
	SRR19364600_2.fastq.gz	Fastqsanger.gz
	SRR19364601_1.fastq.gz	Fastqsanger.gz
	SRR19364601_2.fastq.gz	Fastqsanger.gz
	SRR19364602_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 210

Similar Datasets

Transcriptome analysis of the three equine tissue

Project description:The aim of the project was to identify the tissue-specific patterns of gene expression of selected horse tissues, derived from two germ layers, endodermal (liver and lung) and mesenchymal (cardiac striated muscle) origin.

2023-08-31 | GSE193661 | GEO

Characteristics of microRNA expression profile of equine sarcoid samples

Project description:We report the application of next-generation sequencing for high-throughput profiling of microRNA expression characterictic for horse sarcoid, which is a skin tumor. With the use of HiScanSQ system (Illumina), we obtained over 124 million sequence reads from microRNA libraries. As a result, we identified over 200 known, as well as around 500 potentially novel, miRNA sequences. The analysis of differential expression of the identified miRNAs revealed that over 100 miRNAs were up- or downregulated in the sarcoid tissue in comparison to the control. The analysis of pathways showed e.g. pathways in cancer, viral carcinogenesis or transcriptional misregulation in cancer. Furthermore, microRNAs associated with carcinogenesis in humans were identified, such as: miR-10a, miR-21, miR-200 family. Concluding, our results suggest that microRNAs are largely involved in the neoplastic transformation of horse sarcoids.

2017-06-28 | GSE87901 | GEO

Project description:IMAGE project: CGN Genebank Horse

| PRJEB58829 | ENA

Aesculus chinensis

Project description:Horse chestnut tree genome project

| PRJNA1058543 | ENA

Project description:Japanese Thoroughbred horse project 2019

| PRJEB32686 | ENA

Reduced representation bisulfite sequencing of equine tissue

Project description:The aim of the project was to identify the tissue-specific DNA methylation patterns of selected horse tissues, derived from two germ layers, endodermal (liver and lung) and mesenchymal (cardiac striated muscle) origin. The comparative analysis of DNA methylation patterns of the genome fraction rich in CpG dinucleotides was investigated using Reduced Representation Bisulfite Sequencing (RRBS) technique.

2022-12-31 | GSE191047 | GEO

Homo sapiens

Project description:The 100-Person Wellness Project (HPWP)

| PRJNA384486 | ENA

The 100-Person Wellness Project (HPWP)

Project description:The 100-Person Wellness Project (HPWP)

| PRJNA384485 | ENA

Serial-Omics of Equine Urine - Serial-omics characterization of equine urine

Project description:Horse urine is easily collected and contains molecules readily measurable using mass spectrometry that can be used as biomarkers representative of health, disease or drug tampering. This study aimed at analyzing microliter levels of horse urine to purify, identify and quantify proteins, polar metabolites and non-polar lipids. Urine from a healthy 12 year old quarter horse mare on a diet of grass hay and vitamin/mineral supplements with limited pasture access was collected for serial-omics characterization. The urine was treated with methyl tert-butyl ether (MTBE) and methanol to partition into three distinct layers for protein, non-polar lipid and polar metabolite content from a single liquid-liquid extraction and was repeated two times. Each layer was analyzed by high performance liquid chromatography – high resolution tandem mass spectrometry (LC-MS/MS) to obtain protein sequence and relative protein levels as well as identify and quantify small polar metabolites and lipids. The results show 46 urine proteins, many related to normal kidney function, structural and circulatory proteins as well as 474 small polar metabolites but only 10 lipid molecules. Metabolites were mostly related to urea cycle and ammonia recycling as well as amino acid related pathways, plant diet specific molecules, etc. The few lipids represented triglycerides and phospholipids. These data show a complete mass spectrometry based –omics characterization of equine urine from a single 333 uL mid-stream urine aliquot. The data can be used as a baseline for healthy urine composition and analyses can be used to monitor disease progression, health status, monitor drug use, etc.

2018-07-23 | PXD007646 | Pride

Project description:Fecal metagenomes from cow, dog, horse, sheep and swine collected by the Norwegian HUNT One Health project.

| PRJEB70953 | ENA