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ABSTRACT: Comprehensive analysis of physiological, gut microbiota and transcriptome responses reveals the effects of fed glucan at low salinity in Litopenaeus vannamei

PROVIDER: PRJNA842883 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR19428269_1.fastq.gz	Fastqsanger.gz
	SRR19428269_2.fastq.gz	Fastqsanger.gz
	SRR19428270_1.fastq.gz	Fastqsanger.gz
	SRR19428270_2.fastq.gz	Fastqsanger.gz
	SRR19428271_1.fastq.gz	Fastqsanger.gz

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Project description:In order to gain a better understanding of the impact of Vibrio parahaemolyticus infection on genetic regulation of Litopenaeus vannamei,we performed a transcriptome analysis in the hepatopancreas of Litopenaeus vannamei challenged with Vibrio parahaemolyticus, using the Illumina HiSeq 2500 platform.

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Project description:In order to gain a better understanding of the impact of Vibrio parahaemolyticus infection on genetic regulation of Litopenaeus vannamei,we performed a miRNA-seq analysis in the hepatopancreas of Litopenaeus vannamei challenged with Vibrio parahaemolyticus, using the Illumina HiSeq 2500 platform.

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Tissue-specific expression profiles in L. vannamei

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Project description:RNA from different tissues of Litopenaeus vannamei was used to test the ability of the microarray to discriminate tissue-specific gene expression profiles Keywords: validation, tissue comparison RNA from circulating hemocytes, gills, hepatopancreas, or muscle (3 biological replicates each) was hybridized to the L. vannamei microarray. The number of hybridizing genes was noted and the relationships among the global profiles in each sample were determined by cluster analysis

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