Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptome analysis of Methylomonas sp. DH-1 wild-type and ΔwatR strain according to acetate treatment

ABSTRACT: Transcriptome analysis of Methylomonas sp. DH-1 wild-type and ΔwatR strain according to acetate treatment

PROVIDER: PRJNA849632 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Transcriptome analysis of Methylomonas sp. DH-1 wild-type and ΔwatR strain according to acetate treatment

Project description:WatR (weak acid tolerance regulator) was discovered to contribute to the tolerance against several organic acids. Generally, deletion of watR gene caused decreased tolerance. However, in the case of acetate, the tolerance has been increased according to the absence of watR. In order to determine the relationship between WatR and acetate, we tried to discover the acetate responsive genes in wild-type and ΔwatR strain.

2023-08-08 | GSE206215 | GEO

Comparative transcriptome analysis of a novel obligate Methylomonas sp. DH-1 reveals key differences in the transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

Project description:We integrated genomic and transcriptomic analysis of a newly isolated obligate Methylomonas sp. DH-1 grown on methane and methanol. Comparative transcriptomic analysis between methane and methanol as a sole carbon source revealed different transcriptional responses of Methylomonas sp. DH-1, especially in C1 assimilation, the secondary metabolites pathways and the oxidative stress related genes

2019-02-26 | GSE101494 | GEO

Determination of WatR binding site in Methylomonas sp. DH-1 after lactate adaptive evolution

Project description:JHM80 strain was obtained by adaptive evolution of Methylomonas sp. DH-1 strain against 8.0 g/L of lactate. The tolerance against lactate of JHM80 was obtained by the overexpression of watR (weak acid tolerance regulator). In order to discover the target genes of WatR, FLAG epitope tag was added to WatR of JHM80 strain and ChIP-seq was performed.

2023-08-08 | GSE206216 | GEO

Methylomonas sp. DH-1

Project description:Methylomonas sp. DH-1 Genome sequencing and assembly

| PRJNA312260 | ENA

Methylomonas sp. DH-1 strain:CS40

Project description:Methylomonas sp. DH-1 strain:CS40 Genome sequencing

| PRJNA1066519 | ENA

Regulation of acetate tolerance by unannotated small open reading frame (smORF) polypeptides in Methylomonas sp. DH-1

Project description:Regulation of acetate tolerance by unannotated small open reading frame (smORF) polypeptides in Methylomonas sp. DH-1

| PRJNA849630 | ENA

Methylomonas sp. DH-1

Project description:Comparative transcriptome analysis of a novel obligate Methylomonas sp. DH-1 reveals key differences in the transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

| PRJNA394670 | ENA

Rice acetate treatment

Project description:Rice acetate treatment

| PRJNA476147 | ENA

Rice acetate treatment

Project description:Transcriptional profiling of rice shoot or root treated with acetate. Goal was to determine the effects of acetate on changes in gene expression.

2021-03-23 | GSE115825 | GEO

Determination of WatR binding site in Methylomonas sp. DH-1 after lactate adaptive evolution

Project description:Determination of WatR binding site in Methylomonas sp. DH-1 after lactate adaptive evolution

| PRJNA849631 | ENA