Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Single-cell RNAseq of the resident immune cells from Gli1HhipCKO_Tam and Gli1HhipCKO_Oil_Control mice lungs

ABSTRACT: Single-cell RNAseq of the resident immune cells from Gli1HhipCKO_Tam and Gli1HhipCKO_Oil_Control mice lungs

PROVIDER: PRJNA851817 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Single-cell RNAseq of the resident immune cells from Gli1HhipCKO_Tam and Gli1HhipCKO_Oil_Control mice lungs

Project description:To study resident immune cells in Hhip-deleted lungs, we conduct single-cell RNAseq of the resident immune cells from Gli1HhipCKO_Tam and Gli1HhipCKO_Oil_Control mice lungs using 10X genomics scRNAseq technique.

2023-02-13 | GSE206721 | GEO

Single cell RNA sequencing analysis of mouse resident and infiltrating immune cells during acute kidney injury and fibrosis

Project description:To obtain an unbiased characterization of the resident and infiltrating immune cell populations of mouse kidneys in healthy and diseased states, we performed single cell RNA-seq of facs-sorted CD45+ immune cells and CD4+ T cells from naïve and injured kidneys, at selected time points.

2020-01-31 | E-MTAB-8002 | biostudies-arrayexpress

RNAseq analysis of mouse CD4+ regulatory Tregs in WT and ∆Foxp3 mice isolated from spleen and lungs.

Project description:RNAseq analysis of mouse CD4+ regulatory Tregs in 21-day-old male WT and ∆Foxp3 mice isolated from spleen and lungs.

2021-02-18 | GSE166860 | GEO

RNAseq of rabbit lungs infected with Mycobacterium tuberculosis as single cells or aggregates

Project description:The virulence of Mycobacterium tuberculosis (Mtb), either as mostly aggregates or single cells (Mtb-SC), was compared using a rabbit model of pulmonary infection. Our hypothesis is that aggregation contributes to enhanced virulence of Mtb. Rabbit lung transcriptome was analyzed by RNAseq to identify differentially regulated gene networks and pathways between Mtb-AG and Mtb-SC infection of rabbit lungs soon after seeding of the bacteria (24 hours post-inoculation).

2021-09-22 | GSE176139 | GEO

RNAseq of trachea, bronchi and lungs of mice to investigate expression and distribution of trypsin-like proteases in the murine lower airways.

Project description:RNAseq of trachea, bronchi and lungs of mice to investigate expression and distribution of trypsin-like proteases in the murine lower airways in order to identfy potential host cell proteases capable of cleaving influenza surface glycoprotein hemaglutinine (HA) during infection.

2020-03-27 | E-MTAB-8573 | biostudies-arrayexpress

Single cell RNAseq reveal covid19 patient immune response

Project description:Single cell RNAseq reveal covid19 patient immune response

| PRJNA646704 | ENA

Single-cell RNA-seq of ex vivo CD45-negative skin resident-cells using microfluidic droplet capture

Project description:To obtain a large representation of non-immune skin-resident cells, we profiled CD45-negative cells from a digested skin sample taken from a human female

2018-07-06 | E-MTAB-6831 | biostudies-arrayexpress

The dynamic immune cell landscape in the lungs of Pneumocystis infected mice

Project description:The dynamic immune cell landscape in the lungs of Pneumocystis infected mice

| PRJNA662263 | ENA

Single-cell profiling of developing mouse lungs

Project description:Single-cell profiling of wild type lungs was performed to delineate the expression profile of epithelial, endothelial, mesenchymal and immune cells.

2020-06-02 | GSE144769 | GEO

RNAseq on lungs from WT vs claudin 4 KO mice that underwent ventilator-induced lung injury

Project description:WT mice and claudin 4 KO mice were exposed to ventilator-induced lung injury (VILI) for 2 hours. We found that in some Cldn4 KO mice, injury was similar to WT, while in others, injury was higher, as assessed by amount of protein leak into broncho-alveolar lavage fluid. We performed RNAseq to find which genes were responsible for higher injury in Cldn4 KO mice. WT mice and claudin 4 KO mice were exposed to ventilator-induced lung injury (VILI) for 2 hours. RNA were extracted from whole lungs and RNA sequencing was performed. The samples are (all in duplicates): WT no VILI, Cldn4 KO no VILI, WT VILI, Cldn4 KO VILI with similar injury to WT (Cldn4 KOlow), and Cldn4 KO VILI with higher injury than WT (Cldn4 KOhigh)

2014-11-04 | E-GEOD-50927 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data