Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Metagenomic analysis of Ancient Egyptian Canopic Jars

PROVIDER: PRJNA855637 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR20218501_1.fastq.gz	Fastqsanger.gz
	SRR20218501_2.fastq.gz	Fastqsanger.gz
	SRR20218502_1.fastq.gz	Fastqsanger.gz
	SRR20218502_2.fastq.gz	Fastqsanger.gz
	SRR20218503_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 105

Similar Datasets

Metagenomic analysis of Egyptian mummies

Project description:Metagenomic analysis of Egyptian mummies.

| PRJEB33848 | ENA

Non-destructive Palaeoproteomics Of Mummified Human Skin

Project description:Palaeoproteomic study of mummified human skin using a non-destructive sampling technique, based on mixed-bed chromatographic media stabilised on ethylene vinyl acetate membranes (“EVA”), which had previously been used exclusively on historical material, was successful in extracting ancient proteins from the surface of Ancient Egyptian mummies. We tested the method on a decontextualised fragment of skin and assessed the endogeneity of its metaproteome by comparison with a procedural blank. Furthermore, we retrieved and authenticated sequences of collagen and keratin from the mummy of a young woman (Supp. 16747 of the Museum of Anthropology and Ethnography of the University of Turin) who lived and died between 2400 and 2200 BC, during the Old Kingdom of Egypt.

2020-06-10 | PXD015572 | Pride

Intestinal Flora of ADPKD and Prostate Cancer

Project description:Primary outcome(s): Metagenomic analysis and Metabolome analysis of Intestinal flora before, 2weeks, 1months, 3months, 6months, 12months

| 2636430 | ecrin-mdr-crc

Project description:Metagenomic analysis of nasal virome of Egyptian cattle with respiratory diseases

| PRJNA702539 | ENA

Dental calculus of ancient baboons

Project description:Metagenomic analysis of dental calculus of ancient baboons

| PRJEB34875 | ENA

Development of a novel minimally invasive sampling and analysis technique for bioarchaeological proteomics

Project description:Here we present the development of a novel minimally invasive sample preparation technique for application in the mass spectrometric analysis of bioarchaeological materials. The extraction protocol was developed by applying commercially available, dermatology grade skin sampling strips to modern skin surfaces as a surrogate, and then applied to cranial and bone fragments belonging to a 26th Dynasty Egyptian mummified individual from the coffin of a woman named Mer-Neith-it-es. Extracted proteins were subjected to electrophoretic separation and proteolytic digestion, resulting in peptides that were separated, fragmented and identified using nanoflow liquid chromatography - high resolution tandem mass spectrometry. We have identified a number of ancient brain and intracellular proteins on the surfaces of the various cranial and bone fragments, without causing any significant damage to these valuable remains.

2022-04-06 | PXD029003 | Pride

Project description:metagenomic Characterization of Probiotic Bacteria from Egyptian Infants

| PRJNA1111117 | ENA

Project description:Transcriptome Analysis Egyptian Rice Varieties

| PRJNA782864 | ENA

Ritual revealed: psychotropic substances in a Ptolemaic Egyptian vase

Project description:LC-MS/MS-based Proteomic analysis of an archaeological Ptolemaic Egyptian vase. Other complementary analyses performed: aDNA on chloroplasts, metabolomics LC-MS/MS, SR-FTIR microscopy, SR-XRD.

2024-02-26 | PXD040739 | Pride

HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): from reads to pathogens. A specific and exhaustive pipeline for handling metagenomic shotgun sequencing data.

Project description:Next-Generation-Sequencing (NGS) technologies have led to important improvement in the detection of new or unrecognized infective agents, related to infectious diseases. In this context, NGS high-throughput technology can be used to achieve a comprehensive and unbiased sequencing of the nucleic acids present in a clinical sample (i.e. tissues). Metagenomic shotgun sequencing has emerged as powerful high-throughput approaches to analyze and survey microbial composition in the field of infectious diseases. By directly sequencing millions of nucleic acid molecules in a sample and matching the sequences to those available in databases, pathogens of an infectious disease can be inferred. Despite the large amount of metagenomic shotgun data produced, there is a lack of a comprehensive and easy-use pipeline for data analysis that avoid annoying and complicated bioinformatics steps. Here we present HOME-BIO, a modular and exhaustive pipeline for analysis of biological entity estimation, specific designed for shotgun sequenced clinical samples. HOME-BIO analysis provides comprehensive taxonomy classification by querying different source database and carry out main steps in metagenomic investigation. HOME-BIO is a powerful tool in the hand of biologist without computational experience, which are focused on metagenomic analysis. Its easy-to-use intrinsic characteristic allows users to simply import raw sequenced reads file and obtain taxonomy profile of their samples.

2021-07-26 | E-MTAB-9189 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data