Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: sugarcane rhizosphere Raw sequence reads

PROVIDER: PRJNA858879 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR20218600_1.fastq.gz	Fastqsanger.gz
	SRR20218600_2.fastq.gz	Fastqsanger.gz
	SRR20218601_1.fastq.gz	Fastqsanger.gz
	SRR20218601_2.fastq.gz	Fastqsanger.gz
	SRR20218602_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 120

Similar Datasets

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

Sugarcane rhizosphere sample 16S amplification sequence

Project description:Sugarcane rhizosphere sample 16S amplification sequence Raw sequence reads

| PRJNA863243 | ENA

Sugarcane microbiota

Project description:Sugarcane metagenome Raw sequence reads

| PRJNA669036 | ENA

Quantitative profiling of differentially expressed miRNAs in siCTL- and siOASL-transfected HUVECs

Project description:Purpose: The goal of this study is to compare endothelial small RNA transcriptome to identify the target of OASL under basal or stimulated conditions by utilizing miRNA-seq. Methods: Endothelial miRNA profilies of siCTL or siOASL transfected HUVECs were generated by illumina sequencing method, in duplicate. After sequencing, the raw sequence reads are filtered based on quality. The adapter sequences are also trimmed off the raw sequence reads. rRNA removed reads are sequentially aligned to reference genome (GRCh38) and miRNA prediction is performed by miRDeep2. Results: We identified known miRNA in species (miRDeep2) in the HUVECs transfected with siCTL or siOASL. The expression profile of mature miRNA is used to analyze differentially expressed miRNA(DE miRNA). Conclusions: Our study represents the first analysis of endothelial miRNA profiles affected by OASL knockdown with biologic replicates.

2022-09-06 | GSE186354 | GEO

Sequencing of siRNA from soybean containing silencing vectors and empty vectors

Project description:A cDNA library was constructed by Novogene (CA, USA) using a Small RNA Sample Pre Kit, and Illumina sequencing was conducted according to company workflow, using 20 million reads. Raw data were filtered for quality as determined by reads with a quality score > 5, reads containing N < 10%, no 5' primer contaminants, and reads with a 3' primer and insert tag. The 3' primer sequence was trimmed and reads with a poly A/T/G/C were removed

2021-07-21 | GSE180131 | GEO

Saccharum hybrid cultivar cultivar:Yacheng05-179 and ROC22

Project description:sugarcane Small RNA Raw sequence reads

| PRJNA322114 | ENA

sugarcane vinassse metagenome

Project description:sugarcane vinassse metagenome Raw sequence reads

| PRJNA507433 | ENA

Sugarcane mosaic virus

Project description:Sugarcane mosaic virus Raw sequence reads

| PRJNA545885 | ENA

Expression of the host and pathogen genes during sugarcane - S. scitamineum interaction

Project description:According to the key words, the gene set, including oxidation-reduction, RNA silence, disease resistance, phytohormone, phosphorylation, dephosphorylation, transcription factor, receptor, kinase, ubiquitination and RNA binding,etc. from sugarcane and the whole CDS sequence from smut genome, was achieved and used as targets in the present microarray assay. Based on smut infection samples from smut-susceptible sugarcane genotype YC71-374 and smut-resistant sugarcane genotype NCo376, the hybridization was conducted and validated by real-time fluorescent quantitative PCR. It would provide a basic data for the study on sugarcane-smut interaction mechanism, which referred to sugarcane smut resistance and smut pathogenesis.

2022-08-02 | GSE140801 | GEO

Rhizosphere

Project description:Rhizosphere Raw sequence reads

| PRJNA522939 | ENA