Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Schaalia odontolytica strain:KHUD_008

ABSTRACT: Schaalia odontolytica strain:KHUD_008 Genome sequencing

PROVIDER: PRJNA863379 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR24086629_subreads.fastq.gz	Fastqsanger.gz
	SRR24086630_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Schaalia odontolytica strain:KHUD_005

Project description:Schaalia odontolytica strain:KHUD_005 Genome sequencing

| PRJNA837368 | ENA

Schaalia odontolytica strain:17982

Project description:Schaalia odontolytica strain:17982 Genome sequencing and assembly

| PRJNA341372 | ENA

Schaalia odontolytica strain:XH001

Project description:Schaalia odontolytica strain:XH001 Genome sequencing and assembly

| PRJNA298751 | ENA

Schaalia odontolytica strain:LMG 18080

Project description:Schaalia odontolytica strain:LMG 18080 Genome sequencing

| PRJNA1009872 | ENA

Transcriptome of epibiont Saccharibacteria TM7x during establishment of symbiosis on host Schaalia odontolyticus strain XH001

Project description:Nanosynbacter lyticus type strain TM7x was the first cultivated member of the broadly prevelent, but poorly udnerstood Candidate Phylum Radiation super-phylum. TM7x was shown to be an obligate epibiont with a host range including Schaalia odontolyticus strain XH001. The process of infecting a naive host goes through multiple phases, from an initial binding and interaction phase we call the initial encounter, to a rapid die off of infected host cells, killing phase, followed by regrowth of the host cells, regrowth phase, and finally a stable symbiosis between the species, stable symbiosis.To obtain a better understanding of the process by which these species establish a stable symbiosis, we measured the transcriptome using RNA sequencing across the course of infection. We sampled infected host, XH001/TM7x, during the initial interaction, regrowth, and after attaining stable symbiosis, as well as naive host controls grown under the same culture conditions.

2022-07-18 | GSE196744 | GEO

Complete genome sequence of Schaalia odontolytica isolated from subgingival biofilm.

Project description:ObjectiveRecent advancements in genome-based taxonomic classification propose the reclassification of certain Actinomyces species into new genera, including Schaalia. Schaalia odontolytica, the type species within this genus, is frequently found in the human oral cavity and has been associated with actinomycotic lesions. Currently, only two complete genomes of S. odontolytica strains have been reported. Recognizing the limited research on subspecies-level variation of S. odontolytica, we conducted genome sequencing of strain KHUD_008, isolated from a Korean periodontitis patient's subgingival biofilm. Additionally, we performed a comparative genome analysis using previously sequenced genomes of strain XH001 and strain FDAARGOS_732, both derived from the human oral cavity.Data descriptionPacific Biosciences Sequel II sequencing generated 15,904 and 76,557 raw sequencing sub-reads, which were integrated to assemble the de novo genome using the Microbial Genome Analysis pipeline in the Single-Molecule Real-Time Analysis. The genome assembly completeness, assessed by Benchmarking Universal Single-Copy Orthologs, reached 99.2%. The genome is 2,389,595 bp with a GC content of 66.37%, and contains 2,002 protein-coding genes, 9 rRNAs, and 48 tRNA. Comparative analysis with two previously sequenced strains revealed many strain-specific genes in KHUD_008, primarily related to envelope biogenesis and replication/recombination/repair processes.

| S-EPMC10854015 | biostudies-literature

Schaalia georgiae strain:KHUD_A1

Project description:Schaalia georgiae strain:KHUD_A1 Genome sequencing and assembly

| PRJNA506357 | ENA

Draft Genome Sequence of <i>Schaalia odontolytica</i> Strain ORNL0103, a Basibiont of "<i>Candidatus</i> Saccharibacteria" HMT352.

Project description:Here, we report the draft, nearly complete genome sequence of the human oral actinobacterium Schaalia odontolytica strain ORNL0103, which was isolated in association with "Candidatus Saccharibacteria" HMT352 strain ORNL0105. The genome was sequenced using a combination of Pacific Biosciences and Illumina platforms and encodes 1,948 proteins and 60 RNAs.

| S-EPMC8567789 | biostudies-literature

Schaalia

Project description:Schaalia sp. overview

| PRJNA649039 | ENA

Schaalia cardiffensis strain:CCUG 44997

Project description:Schaalia cardiffensis strain:CCUG 44997 Genome sequencing and assembly

| PRJNA686825 | ENA