Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Effect of the depletion of ZC3H41 (Tb927.11.1980) on the transcriptome of procyclic Trypanosome brucei

ABSTRACT: Effect of the depletion of ZC3H41 (Tb927.11.1980) on the transcriptome of procyclic Trypanosome brucei

PROVIDER: PRJNA878472 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR21487194_1.fastq.gz	Fastqsanger.gz
	SRR21487194_2.fastq.gz	Fastqsanger.gz
	SRR21487195_1.fastq.gz	Fastqsanger.gz
	SRR21487195_2.fastq.gz	Fastqsanger.gz
	SRR21487196_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Effect of the depletion of ZC3H41 (Tb927.11.1980) on the transcriptome of procyclic Trypanosome brucei

Project description:Depletion of ZC3H41 has minor effects on the transcriptome of procyclic trypanosomes. In general, ZC3H41-regulated transcripts seem to be expressed at low abundance, and almost half of them (43%) are probably non-coding, since the corresponding encoded proteins have not been detected in proteomic surveys . A transcript encoding a trans-sialidase (Tb927.11.11410) was clearly upregulated in ZC3H41-depleted cells .

2023-03-29 | GSE212921 | GEO

Effect of the depletion of RBP33 (Tb927.8.990) on the transcriptome of bloodstream and procyclic Trypanosome brucei [RNA-seq]

Project description:RBP33 depletion results in the overexpression of 40% (bloodstream) or 20% (procyclic) of all transcripts annotated in the 427 2018 genome

2022-11-03 | GSE186563 | GEO

Effect of the depletion of RBP33 (Tb927.8.990) on the transcriptome of bloodstream and procyclic Trypanosome brucei [RNA-seq]

Project description:Effect of the depletion of RBP33 (Tb927.8.990) on the transcriptome of bloodstream and procyclic Trypanosome brucei [RNA-seq]

| PRJNA774552 | ENA

RNAi of TbNMD3 in procyclic form Trypanosoma brucei lines

2015-04-28 | GSE67246 | GEO

RNA-seq of Trypanosoma brucei brucei ZC3H22 RNAi depletion in procyclic forms

Project description:RNA-seq of Trypanosoma brucei brucei ZC3H22 RNAi depletion in procyclic forms

| PRJEB40988 | ENA

RNAi of TbNMD3 in procyclic form Trypanosoma brucei lines

Project description:A procyclic form Trypansome brucei RNAi line (PTT parental line, transfected with pALC14 incorporating a TbNMD3 gene fragment) capable of inducing depletion of TbNMD3 was analysed for mRNA expression by RNAseq Cells were grown for 72 hours in culture; RNAi was induced in cells by the addition of 1 microgram/ml of tetracycline

2015-04-28 | E-GEOD-67246 | biostudies-arrayexpress

Function of Trypanosome brucei RBP10

Project description:Function of Trypanosome brucei RBP10

| PRJEB13058 | ENA

Trypanosoma brucei

Project description:Effect of TbDRBD3 depletion on procyclic T. brucei transcriptome

| PRJNA101995 | ENA

Poly(A)-Specifc Ribonuclease 1 (PARN-1) Overexpression in Procyclic T. brucei

Project description:We sought to determine the effect of TbPARN-1 overexpression on global mRNA steady-state levels in T. brucei. The mRNA expression profile of tet-induced TbPARN-1 OvEx procyclic cells was compared to the mRNA profile of control cells (expressing tet-induced TAP tag alone) by microarray analysis. Since overexpression of TbPARN-1 showed increased deadenylation activity in cytoplasmic extracts, overexpressing PARN-1 in vivo should result in more rapid deadenylation and decay of mRNAs targeted by PARN-1. Thus, mRNAs with lower steady state levels in PARN-1 OvEx cells can be considered likely targets for PARN-1-dependent deadenylation.

2010-03-05 | GSE20593 | GEO

Heat shock of procyclic Trypanosoma brucei.

Project description:Heat shock of procyclic Trypanosoma brucei.

| PRJEB12997 | ENA