Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Vineyard soil

ABSTRACT: Ion Torrent Sequencing_Soil Bacterial Metagenome

PROVIDER: PRJNA883056 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR21700600.fastq.gz	Fastqsanger.gz
	SRR21700600_1.fastq.gz	Fastqsanger.gz
	SRR21700600_2.fastq.gz	Fastqsanger.gz
	SRR21700603.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 46

Similar Datasets

Vineyard soil

Project description:Ion Torrent Sequencing_Soil Fungal Metagenome

| PRJNA885132 | ENA

Fresh Grape Must

Project description:Ion Torrent Sequencing_Grape Must Bacterial Metagenome

| PRJNA936572 | ENA

MicroRNA sequencing of mouse soleus muscle

Project description:MicroRNA sequencing using Ion Torrent Proton platform

2015-03-31 | GSE63342 | GEO

Fresh Grape Must

Project description:Ion Torrent Sequencing_Grape Must Fungal Metagenome

| PRJNA936571 | ENA

Semiconductor-based sequencing of genome-wide DNA methylation states

Project description:Methylated DNA immunoprecipitation sequencing (MeDIP-Seq) is a widely used approach to study DNA methylation genome-wide. Here, we present a novel MeDIP-Seq protocol compatible with the Ion Torrent semiconductor-based sequencing platform that is scalable and accurately identifies sites of differential DNA methylation. Additionally, we demonstrate that the high-throughput data derived from MeDIP-Seq on the Ion Torrent platform provides adequate coverage of CpG cytosines, the methylation states of which we validated at single-base resolution on the Infinium HumanMethylation450K Beadchip array. We applied this integrative approach to further investigate the role of DNA methylation in alternative splicing and to profile 5-mC and 5-hmC variants of DNA methylation in normal human brain tissue that we observed localize over distinct genomic regions. These applications of MeDIP-Seq on the Ion Torrent platform have broad utility and add to the current methodologies for profiling genome-wide DNA methylation states in normal and disease conditions. MeDIP-Seq on Ion Torrent Platform in HCT116 and Human Brain

2015-06-10 | E-GEOD-61968 | biostudies-arrayexpress

MC Ion Torrent Nextera 500pg

Project description:MC Ion Torrent Nextera 500pg Synthetic Metagenome

| PRJNA172891 | ENA

MC Ion Torrent Standard 500ng

Project description:MC Ion Torrent Standard 500ng Synthetic Metagenome

| PRJNA172889 | ENA

MC Ion Torrent Nextera 50ng

Project description:MC Ion Torrent Nextera 50ng Synthetic Metagenome

| PRJNA172890 | ENA

mixed culture

Project description:Ion Torrent Bias Experiment

| PRJNA167265 | ENA

Rapid and affordable genome-wide bisulfite DNA sequencing by XmaI-RRBS

Project description:We describe XmaI-RRBS method for rapid and affordable genome-wide DNA methylation analysis, with library preparation taking only four days and sequencing possible within four hours. Small sizes of the XmaI-RRBS libraries allow their multiplexing and sequencing on the benchtop high-throughput machines. Described here is the first RRBS protocol validated for the Ion Torrent Personal Genome Machine. DNA from MCF7 cell line and 6 normal breast samples (total 7 samples) were subjected to reduced representation bisulfite sequencing analysis (XmaI-RRBS) by using Ion Torrent platform.

2015-11-01 | E-GEOD-74126 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data