Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Sequencing results of rumen fermentation microorganisms in vitro

PROVIDER: PRJNA883176 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR21720841_1.fastq.gz	Fastqsanger.gz
	SRR21720841_2.fastq.gz	Fastqsanger.gz
	SRR21720842_1.fastq.gz	Fastqsanger.gz
	SRR21720842_2.fastq.gz	Fastqsanger.gz
	SRR21720843_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 30

Similar Datasets

bovine gut metagenome

Project description:Bovine rumen in vitro fermentation

| PRJNA678115 | ENA

In vitro fermentation with rumen fluid

Project description:In vitro fermentation with rumen fluid

| PRJNA940661 | ENA

Butyrivibrio hungatei MB2003 and Butyrivibrio proteoclasticus B316T grown in mono- and co-cultures on xylan or pectin

Project description:Rumen bacterial species belonging to the genera Butyrivibrio are important degraders of plant polysaccharides, particularly hemicelluloses (arabinoxylans) and pectin. Currently, four distinct species are recognized which have very similar substrate utilization profiles, but little is known about how these microorganisms are able to co-exist in the rumen. To investigate this question, Butyrivibrio hungatei MB2003 and Butyrivibrio proteoclasticus B316T were grown alone or in co-culture on the insoluble substrates, xylan or pectin, and their growth, release of sugars, fermentation end products and transcriptomes were examined. In single cultures, B316T was able to degrade and grow well on xylan and pectin, while MB2003 was unable to utilize either of these insoluble substrates to support significant growth. Co-cultures of B316T grown with MB2003 revealed that MB2003 showed almost equivalent growth to B316T when either xylan or pectin were supplied as substrates. The effect of co-culture on the transcriptomes of B316T and MB2003 was very marked; B316T transcription was largely unaffected by the presence MB2003, but MB2003 expressed a wide range of genes encoding carbohydrate degradation/metabolism and oligosaccharide transport/assimilation in order to compete with B316T for the released sugars. These results suggest that B316T has a role as an initiator of the primary solubilization of xylan and pectin, while MB2003 competes effectively as a scavenger for the released soluble sugars to enable its growth and maintenance in the rumen.

2018-09-27 | GSE120544 | GEO

Project description:Bovine rumen microbiome sequencing after in-vitro fermentation

| PRJNA1020825 | ENA

Changes in rumen fermentation and transcriptomes of liver tissue in Holstein cows with and those without subacute ruminal acidosis during the periparturient period

Project description:We investigated changes in rumen fermentation, peripheral blood metabolites and hormones, and hepatic transcriptomic dynamics in Holstein cows with and those without subacute ruminal acidosis (SARA) during the periparturient period.

2020-01-17 | GSE143765 | GEO

in vitro rumen fermentation

Project description:in vitro rumen fermentation Raw sequence reads

| PRJNA1175582 | ENA

In vitro rumen fermentation

Project description:In vitro rumen fermentation Raw sequence reads

| PRJNA560091 | ENA

gut metagenome

Project description:in vitro rumen fermentation Raw sequence reads

| PRJNA375836 | ENA

in vitro rumen fermentation

Project description:in vitro rumen fermentation Raw sequence reads