Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Evolution of mitochondrial genomes in perianth-bearing Piperales

PROVIDER: PRJNA888954 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR21851000_1.fastq.gz	Fastqsanger.gz
	SRR21851000_2.fastq.gz	Fastqsanger.gz
	SRR21851001_1.fastq.gz	Fastqsanger.gz
	SRR21851001_2.fastq.gz	Fastqsanger.gz
	SRR21851002_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 22

Similar Datasets

TFAM ChIP-seq in HeLa cells

Project description:ChIP-seq data characterizing the occupancy of TFAM over the mitochondrial and nuclear genomes in HeLa cells. Characterization of mitochondrial and nuclear genome-wide TFAM binding in HeLa cells

2013-09-21 | E-GEOD-48176 | biostudies-arrayexpress

Project description:Revisiting mitogenome evolution in Medusozoa with eight new mitochondrial genomes

| PRJNA934731 | ENA

Evolutionary consequences of DNA methylation on the GC content in vertebrate genomes

Project description:The genomes of many vertebrates show a characteristic variation in GC content. To explain its origin and evolution mainly three mechanisms have been proposed, selection for GC content, mutation bias and GC-biased gene conversion. At present the mechanism of GC-biased gene conversion, i.e. short-scale, unidirectional exchanges between homologous chromosomes in the neighborhood of recombination-initiating double-strand breaks in favor for GC nucleotides, is the most widely accepted hypothesis. We here suggest that DNA methylation also plays an important role in the evolution of GC content in vertebrate genomes. To test this hypothesis we investigated one mammalian (human; GSE30340) and one avian (chicken) genome. We used bisulfite sequencing to generate a whole-genome methylation map of chicken sperm. Human processed data files (spermdonor1, #reads>=1) were downloaded from the NGSmethDB database (http://bioinfo2.ugr.es/NGSmethDB/database.php). Inclusion of these methylation maps into a model of GC content evolution provided significant support for the impact of DNA methylation on the local equilibrium GC content. Moreover, two different estimates of equilibrium GC content, one which neglects and one which incorporates the impact of DNA methylation and the concomitant CpG hypermutability, give estimates that differ about 15% in both genomes, arguing for a strong impact of DNA methylation on the evolution of GC content. Thus, our results put forward that previous estimates of equilibrium GC content, which neglect the hypermutability of CpG dinucleotides, need to be reevaluated. Genomic DNA from chicken mature sperm was isolated, bisulfite converted and sequenced on a Illumina HiSeq instrument

2015-01-23 | E-GEOD-56639 | biostudies-arrayexpress

Project description:insect mitochondrial genomes

| PRJNA758734 | ENA

Project description:Helianthus mitochondrial genomes

| PRJNA731105 | ENA

Project description:Mitochondrial genomes Rhabdocoela

| PRJNA606139 | ENA

Project description:1000 Mitochondrial Genomes

| PRJNA811355 | ENA

Eukaryota Metazoa Ecdysozoa Arthropoda Hexapoda Insecta Pterygota Neoptera Polyneoptera Orthoptera Ensifera Gryllidea

Project description:Cricket mitochondrial genomes

| PRJNA739105 | ENA

K-562 cell lines

Project description:Divergence of K-562 genomes through in vitro clonal evolution revealed by comparing three sublines. Comparison of three K-562 sublines

2024-01-01 | GSE243782 | GEO

Dog_CGH_Array on 54 breed and village dogs and one wolf

Project description:Comprehensive view of structural variation across dog genomes including mobile elements and nuclear mitochondrial insertions

2020-07-02 | GSE153608 | GEO