Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana cultivar:Columbia-0

ABSTRACT: Arabidopsis thaliana transcriptome for roots and shoots, following antimycin A or myxothiazol treatment in the light and dark

PROVIDER: PRJNA894307 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22058900.fastq.gz	Fastqsanger.gz
	SRR22058901.fastq.gz	Fastqsanger.gz
	SRR22058902.fastq.gz	Fastqsanger.gz
	SRR22058903.fastq.gz	Fastqsanger.gz
	SRR22058904.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 72

Similar Datasets

Arabidopsis thaliana cultivar:Columbia-0

Project description:Arabidopsis thaliana transcriptome following antimycin A or myxothiazol treatment in the light and dark

| PRJNA843852 | ENA

Arabidopsis thaliana cultivar:Columbia-0

Project description:Arabidopsis thaliana response to cytokinin in roots and shoots

| PRJNA286779 | ENA

Transcriptomic response of Arabidopsis thaliana to the two rare earth elements lanthanum and ytterbium

Project description:The goal of this study is to compare the transcriptome (RNA-seq) modulations in the roots and shoots of Arabidopsis thaliana, as a plant model, exposed to two toxic concentrations of rare earth elements. Lanthanum and ytterbium were used as representative of light and heavy rare earth elements, respectively.

2023-07-23 | GSE237657 | GEO

Genome-wide Binding Site Analysis of FAR-RED ELONGATED HYPOCOTYL 3 Reveals Its Novel Function in Arabidopsis Development

Project description:This SuperSeries is composed of the following subset Series: GSE30711: ChIP-Seq data from Arabidopsis thaliana under dark and far-red light GSE30712: Expression data from Arabidopsis thaliana under dark and far-red light Refer to individual Series

2011-12-31 | E-GEOD-30713 | biostudies-arrayexpress

BBX32 Role in Early Light Signaling in Arabidopsis

Project description:The transcriptional profiles of several genotypes of Arabidopsis seedling shoots were compared in dark and after 1 hr of monochromatic red-light treatment.

2011-06-30 | GSE21174 | GEO

Global transcriptomic analysis of Arabidopsis thaliana ecotype Columbia-0 subjected to magnesium deficiency

Project description:Magnesium (Mg) is essential for many biological processes in plant cells and its deficiency causes yield reduction in crop systems. Low Mg status reportedly impacts on photosynthesis, sucrose partitioning and biomass allocation. However, earlier responses to Mg deficiency are scarcely described. Generally, symptoms of nutrient deficiency appear in specific ages of leaves. Therefore, we hypothesised that transcriptional responses to Mg deficiency are different depending on the ages of leaves, and performed a global transcriptomic analysis in two types of leaves; source and sink leaves of the model plant species Arabidopsis thaliana to reveal the earlier responses to Mg deficiency. The global transcriptomic study revealed that short-term Mg deficiency triggers the expression of defence response genes in sink leaves. In roots, although short-term Mg deficiency enhanced the Mg2+ uptake from the environmnet, transcriptional levels of genes encoding putative Mg2+ transporters in roots were unchanged, suggesting non-transcriptional regulation of Mg2+ uptake in roots.

2020-04-29 | GSE140070 | GEO

BBX32 Role in Early Light Signaling in Arabidopsis

Project description:The transcriptional profiles of several genotypes of Arabidopsis seedling shoots were compared in dark and after 1 hr of monochromatic red-light treatment. The transcriptional profiles of several genotypes of Arabidopsis seedling shoots were compared in dark and after 1 hr of monochromatic red-light treatment.

2011-06-30 | E-GEOD-21174 | biostudies-arrayexpress

Molecular characterization of the submergence response of Arabidopsis thaliana ecotype Columbia

Project description:This study profiles transcriptomic changes of Arabidopsis thaliana Col-0 in response to submergence. This dataset includes CEL files, RMA signal values and MAS5 P/M/A calls from total mRNA populations of plants at 9 to 10 leaf rosette stage. Biological replicates of root and shoot tissues were harvested after 7 h and 24 h of submergence in darkness along with corresponding non-submerged dark controls. To characterize the dark response, non-submerged light controls plants were harvested at the 0 h time point. Quantitative profiling of cellular mRNAs was accomplished with the Affymetrix ATH1 platform. Changes in the transcriptome in response to submergence and early darkness were evaluated, and the data led to identification of genes co-regulated at the conditional and organ-specific level.

2010-11-12 | GSE24077 | GEO

Tissue Type Arrays of Columbia-0

Project description:This experiment has been annotated by TAIR (http://arabidopsis.org). In this experiment, different tissue preparations of wild type Columbia-0 Arabidopsis thaliana plants were hybridized and run on the ATH1 Affymetrix platform. Experimenter name = Chris Somerville Experimenter phone = 650-325-1521 ext203 Experimenter fax = 650-325-6857 Experimenter address = Plant Biology Experimenter address = Carnegie Institution Experimenter address = 260 Panama Street Experimenter address = Stanford Experimenter zip/postal_code = CA 94305-1297 Experimenter country = USA Keywords: organism_part_comparison_design;

2006-08-15 | GSE5533 | GEO

Transcription profiling of Arabidopsis wild type Col-0, cry1 and hfr1 plants in response to dark and blue light treatment

Project description:micrarray profiling on Arabidopsis thaliana col-0, cry1 and hfr1 in response to dark and 1 h blue light treatment

2008-10-29 | E-MEXP-1784 | biostudies-arrayexpress