Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Metagenome sequencing of natural fermented milk

PROVIDER: PRJNA895761 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22103700_1.fastq.gz	Fastqsanger.gz
	SRR22103700_2.fastq.gz	Fastqsanger.gz
	SRR22103701_1.fastq.gz	Fastqsanger.gz
	SRR22103701_2.fastq.gz	Fastqsanger.gz
	SRR22103702_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 25

Similar Datasets

Gene expression profile of Lactobacillus casei Zhang in fermented milk during transit in simulated gastrointestinal tract

Project description:The survival of probiotics could be strongly enhanced by delivery vehicles, but the mechanism was unknown. In this study, whole genome microarray technology was used to detect the gene expression profiles of probiotic Lactobacillus casei Zhang in the absence and presence of fermented milk in simulated gastrointestinal tract. The results showed the gene expression profiles were significantly different under these two different conditions. The change of the gene expression profile may be helpful to comprehend the role of delivery vehicles in enhancing the survival of probiotics. Twelve samples of bacterial cells in the absence and presence of fermented milk were collected at 3 h in simulated gastric juice, 4 h and 8 h in intestinal juice, 2 biological replicates were obtained in each time point. The average of the normalized expression values of the 2 biological replicates for each probe was regarded as the expression value of a predicted gene. To identify the expression pattern of each gene across different treatments, n-fold change ratios were calculated for every gene in pure L. casei Zhang versus L. casei Zhang in fermented milk.

2011-12-31 | E-GEOD-23685 | biostudies-arrayexpress

Lactobacillus delbrueckii strain:fermented milk | isolate:fermented milk

Project description:Lactobacillus delbrueckii strain:fermented milk | isolate:fermented milk Genome sequencing

| PRJNA808174 | ENA

Peptide profiling of sheep milk kefir through peptidomic analysis at different fermentation times

Project description:In this study, we applied a proteomics strategy to identify peptides present in sheep milk kefir fermented at different times. We aimed to understand changes in the digestion pattern of milk proteins as well as to identify potential bioactive peptides.

2023-08-20 | PXD044067 | Pride

Project description:Traditional fermented yak milk sequencing

| PRJNA881731 | ENA

The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. (COPRO-Seq)

Project description:Understanding how the human gut microbiota and host are impacted by probiotic bacterial strains requires carefully controlled studies in humans, and in mouse models of the gut ecosystem where potentially confounding variables that are difficult to control in humans can be constrained. Therefore, we characterized the fecal microbiomes and metatranscriptomes of adult female monozygotic twin pairs through repeated sampling 4 weeks prior to, 7 weeks during, and 4 weeks following consumption of a commercially-available fermented milk product (FMP) containing a consortium of Bifidobacterium animalis subsp. lactis, two strains of Lactobacillus delbrueckii subsp. bulgaricus, Lactococcus lactis subsp. cremoris, and Streptococcus thermophilus. In addition, gnotobiotic mice harboring a 15-species model human gut microbiota whose genomes contain 58,399 known or predicted protein-coding genes were studied prior to and after gavage with all five sequenced FMP strains. 140 samples total. Evaluation of changes in a model community's structure over time after exposure to a consortium of 5 fermented milk product (FMP) strains.

2011-11-01 | E-GEOD-31943 | biostudies-arrayexpress

Defining the Secrebiome: the expressed secretome of the gut microbiome and its role in obese Mexican children

Project description:high throughput sequencing of the metagenome of mexican children

2020-03-16 | GSE143207 | GEO

Project description:Natural milk culture 16s sequencing

| PRJNA916949 | ENA

Project description:Composition and Diversity of Natural Bacterial Communities in Mabisi, a Traditionally Fermented Milk

| PRJNA647247 | ENA

Project description:Diversity of traditional fermented milk

| PRJNA856994 | ENA

BIOPROSPECTING OF KEFIR: SEARCH FOR BIOACTIVE PEPTIDES BY PROTEOMICS AND EVALUATION OF THEIR EFFECTS IN THE CARDIOVASCULAR SYSTEM OF HYPERTENSIVE ANIMALS

Project description:Kefir is a milk fermented by microorganisms with probiotic potential. Its consumption is associated with several beneficial effects, from antibacterial, healing, antioxidant, anti-inflammatory, anti-allergic, plasma glucose and cholesterol control to antitumor and antihypertensive activities. Despite its great potential, little is known about the bioactive molecules responsible for these actions. Therefore, the present project aims to perform the proteomic study of Kefir and its grain used for the milk fermentation aiming to identify the bioactive peptides, in particular those peptides with action in the cardiovascular system.

2019-12-16 | PXD012074 | JPOST Repository

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data