Dataset Information

ABSTRACT: SMA newborn screening

PROVIDER: PRJNA904501 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR22386593_1.fastq.gz	Fastqsanger.gz
	SRR22386593_2.fastq.gz	Fastqsanger.gz
	SRR22386594_1.fastq.gz	Fastqsanger.gz
	SRR22386594_2.fastq.gz	Fastqsanger.gz

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Project description:modENCODE_submission_3228 This submission comes from a modENCODE project of Michael Snyder. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals. Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: OP130(official name : OP130 genotype : unc119(ed3);wgIs130(sma-9::TY1 EGFP FLAG C;unc119) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The SMA-9::EGFP fusion protein is expressed in the correct sma-9 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the SMA-9 transcription factor. made_by : S Kim ); Developmental Stage: L2; Genotype: unc119(ed3);wgIs130(sma-9::TY1 EGFP FLAG C;unc119); Sex: Hermaphrodite; EXPERIMENTAL FACTORS: Developmental Stage L2; Target gene sma-9; Strain OP130(official name : OP130 genotype : unc119(ed3);wgIs130(sma-9::TY1 EGFP FLAG C;unc119) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The SMA-9::EGFP fusion protein is expressed in the correct sma-9 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the SMA-9 transcription factor. made_by : S Kim ); temp (temperature) 20 degree celsius

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