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ABSTRACT: Transcriptomics of Microcystis aeruginosa FACHB-905 under phosphorus stress

PROVIDER: PRJNA905079 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR22417520_1.fastq.gz	Fastqsanger.gz
	SRR22417520_2.fastq.gz	Fastqsanger.gz
	SRR22417521_1.fastq.gz	Fastqsanger.gz
	SRR22417521_2.fastq.gz	Fastqsanger.gz
	SRR22417522_1.fastq.gz	Fastqsanger.gz

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Microcystis aeruginosa FACHB-905 = DIANCHI905

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Project description:In this study, the individual and combined toxicity of 50 μM Cd2+ exposure and K+ pressure to Microcystis aeruginosa (FACHB-905) were investigated.

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Microcystis aeruginosa FACHB-905 = DIANCHI905

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Microcystis aeruginosa FACHB-905 = DIANCHI905

Project description:Microcystis aeruginosa FACHB-905 = DIANCHI905 Raw sequence reads

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Investigation on the quantitative proteomic responses of bloom-forming Cyanobacteria Microcystis aeruginosa to phosphorus depletion and starvation by the method of isobaric tags for relative and absolute quantitation (iTRAQ)

Project description:Microcystis aeruginosa cells were treated with phosphorus repletion, depletion and starvation. Isobaric tags for relative and absolute quantitation (iTRAQ) proteomic method was employed to explore to the effects of phosphorus limitation on Microcystis aeruginosa cells at the protein level. This investigation would contribute to the understanding of global cellular responses of Microcystis to phosphorus limitation and provide theoretical basis for deciding whether it is an effective way to control Microcystis blooms by phosphorus reduction.

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Microcystis aeruginosa FACHB-905 = DIANCHI905

Project description:Microcystis aeruginosa FACHB-905 = DIANCHI905 Genome sequencing and assembly

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Microcystis aeruginosa FACHB-905 = DIANCHI905 strain:FACHB905

Project description:Microcystis aeruginosa FACHB-905 = DIANCHI905 strain:FACHB905 Raw sequence reads

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Microcystis aeruginosa FACHB-905 = DIANCHI905 strain:FACHB905

Project description:Microcystis aeruginosa FACHB-905 = DIANCHI905 strain:FACHB905 Raw sequence reads

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Project description:Transcriptomic analysis of Microcystis aeruginosa FACHB 905 upon hydrogen peroxide

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Bisulfite sequencing with Daphnia highlights a role for epigenetics in regulating stress response to Microcystis through preferential differential methylation of serine and threonine amino acidsing bi-sulfite treatment

Project description:Little is known about the influence that environmental stressors may have on genome-wide methylation patterns, and to what extent epigenetics may be involved in environmental stress response. Yet, studies of methylation patterns under stress could provide crucial insights on stress response and toxicity pathways. Here, we focus on genome-wide methylation patterns in the micro-crustacean Daphnia magna, a model organism in ecotoxicology and risk assessment, exposed to the toxic cyanobacterium Microcystis aeruginosa. Bisulfite sequencing of exposed and control animals highlighted differential methylation patterns in Daphnia upon exposure to Microcystis primarily in exonic regions. These patterns are enriched for serine/threonine amino acid codons and genes related to protein synthesis, transport and degradation. Furthermore, we observed that genes with differential methylation corresponded well with genes susceptible to alternative splicing in response to Microcystis stress. Overall, our results suggest a complex mechanistic response in Daphnia characterized by interactions between DNA methylation and gene regulation mechanisms. These results underscore that DNA methylation is modulated by environmental stress and can also be an integral part of the toxicity response in our study species.

2016-12-16 | GSE83407 | GEO

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