Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptome sequencing of mango tissue

PROVIDER: PRJNA905802 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22478540_1.fastq.gz	Fastqsanger.gz
	SRR22478540_2.fastq.gz	Fastqsanger.gz
	SRR22478541_1.fastq.gz	Fastqsanger.gz
	SRR22478541_2.fastq.gz	Fastqsanger.gz
	SRR22478542_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 72

Similar Datasets

Transcriptome and Proteomic Analysis of Mango (Mangifera indica Linn) Fruits

Project description:Transcriptome and Proteomic Analysis of Mango (Mangifera indica Linn) Fruits

2015-02-20 | PXD000808 | Pride

Putative Allergens Identified in Mango (Mangifera indica Linn) leaf and fruit with transcriptome analysis

Project description:Purpose: this study provided a comprehensive sequence for a systemic view of the transcriptome between mango leaf and fruit, as well as fruit allergens, which will be useful for further genomic research studies and breeding of lower allergenic mango cultivars. Methods:Some allergens have previously been identified in mango (Mangifera indica Linn), including profilins, Bet v 1-like proteins and chitinase. In this paper, 66 potential allergen genes were identified and their relative expressions evaluated in mango fruit and leaf using Illumina RNA-Seq technology. Results:A total of 17.63Gb Clean Data was obtained.The number of %≥Q30 was above 94.58%.RNA-Seq generated 11,751,123 contigs that were assembled into 99,328 unigenes with 16,848 unigenes of >1000 bp. A total of 230,242 unigenes were annotated using public protein databases, with a cut-off E-value above 10−5, of which 27,295, 46,030, 24,227 and 14,023 unigenes were assigned to gene ontology terms, Nr, Swiss-Prot and clusters of orthologous groups, respectively. Allergens mainly belonged to pollen allergen, pathogenesis-related protein Bet v I family and NADPH-dependent FMN reductase.

2020-12-01 | GSE142427 | GEO

Project description:Transcriptome of mango

| PRJNA1059157 | ENA

Project description:Transcriptome of mango

| PRJNA1120973 | ENA

Project description:Mango color transcriptome

| PRJNA751842 | ENA

Combined analysis of transcriptome and proteome data on differential expression of genes and proteins in skeletal muscle of mice with Sjogren's syndrome treated with Yiqi Yangyin Quyu Formula

Project description:Using Yiqi Yangyin Quyu Formula to intervene in muscle tissue of SS mice for 8 weeks, observing tissue morphology and mitochondrial status, and conducting transcriptome and proteomic sequencing analysis on skeletal muscle

2024-09-11 | PXD055770 |

Project description:Mango ddRAD sequencing

| PRJNA517351 | ENA

proteomic analyses of Mangifera indica L. in response to Xanthomonas critis pv. mangiferaeindicae

Project description:Mango bacterial leaf spot, which is caused by Xanthomonas critis pv. mangiferaeindicae (Xcm), poses a great threat to the development of mango planting industry.This work is the first to study the changes in gene and protein expressions in mango during Xcm infection. Our findings will provide new ideas for MBLS resistance and valuable genetic resources for the breeding of MBLS-resistant mango.

2023-06-27 | PXD043358 |

XLinkProphet Mango XL-MS - 9 Standard Protein Shotgun, ReACT, and Mango Search Results

Project description:9 Standard Protein Shotgun, ReACT, and Mango Search Results

2019-03-13 | PXD008951 | Pride

XLinkProphet Shotgun XL-MS - 9 Standard Protein Shotgun, ReACT, and Mango Search Results

Project description:9 Standard Protein Shotgun, ReACT, and Mango Search Results

2019-03-13 | PXD008941 | Pride