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Effect of antiviral drugs on gene expression in the control of CMV infection in passion fruit

ABSTRACT: Effect of antiviral drugs on gene expression in the control of CMV infection in passion fruit

PROVIDER: PRJNA911221 | ENA |

REPOSITORIES: ENA

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Effect of antiviral drugs on gene expression in the control of CMV infection in passion fruit

Project description:To investigate the resistance mechanism of control drugs in resisting CMV virus, we established an indoor CMV- Passion fruit seedling in vivo screening model, treated with different antiviral commercial agents, and then we performed gene expression profiling on RNA-seq data of the best effective drug treatment group.

2022-12-17 | GSE220712 | GEO

Foodomics study on the anti-proliferative activity mechanisms on HT-29 colon cancer cells in response to banana passion fruit (Passiflora mollissima) seeds PLE-extract

Project description:Passiflora mollissima commonly known as “banana passion fruit” is usually consumed as fresh food or processed products, being seeds and peel the main by-products of the industrial processing. The potentially bioactive metabolites from banana passion fruit PLE-extract seeds have been recently characterized by HPLC-HRMS after sequential pressurized liquid extraction (PLE) To apply a Foodomics approach to study the effects of a banana passion fruit seeds PLE-extract (with high antioxidant capacity and enriched in phenolic-type compounds) on the transcriptome and metabolome of HT-29 colon cancer cells.

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Bacterial diversity identification from samples conventionally produced passion fruit peels

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Fungal samples collected from conventionally produced passion fruit peels

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Tissue-specific proteome profile analysis reveals regulatory and stress responsive networks in passion fruit during storage

Project description:Passiflora edulis, commonly known as passion fruit, is a crop with a fragrant aroma and refreshingly tropical flavor that is a valuable source of antioxidants. It offers a unique opportunity for growers because of its adaptability to tropical and subtropical climates. Passion fruit can be sold in the fresh market or used in value-added products, but its postharvest shelf life has not been well-researched, nor have superior cultivars been well-developed. Understanding the proteins expressed at the tissue level during the postharvest stage can help improve fruit quality and extend shelf life. In this study, we carried out comparative proteomics analysis on four passion fruit tissues, the epicarp, mesocarp, endocarp, and pulp, using multiplexed isobaric tandem mass tag (TMT) labeling quantitation. A total of 3,352 proteins were identified, including 295 differentially expressed proteins (DEPs). Among the DEPs, there were proteins expressed with functions in oxygen scavenging, lipid peroxidation, response to heat stress, and pathogen resistance. This research provides insight into tissue-specific pathways that can be further studied within fruit physiology and postharvest shelf life to aid in implementing effective plant breeding programs. Knowing the tissue-specific function of fruit is essential for improving fruit quality, developing new varieties, identifying health benefits, and optimizing processing techniques.

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Passiflora edulis strain:Passion fruit | isolate:Leaf

Project description:Passiflora edulis strain:Passion fruit | isolate:Leaf Transcriptome or Gene expression

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Passion fruit peel bacterial diversity as seen in samples collected from non-conventionally collected fruit

Project description:Bacterial diversity as revealed in non-conventionally produced passion fruit peel

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Small RNAs from Arabidopsis plants infected with CMV-?2b

Project description:We focused our analyses on the description of viral (CMV-?2b) and, based on genetic and molecular evidence, classified them and discussed their relevance in antiviral defense. Small RNAs from Arabidopsis plants from different genetic backgrounds infected with (CMV-?2b) were sequenced before or after immunoprecipitation with antibodies against key proteins involved in antiviral defense.

2012-03-01 | E-GEOD-27477 | biostudies-arrayexpress

Proteomics Study of Passion Fruit Treated by Spraying Disease resistant DrugsFruit

Project description:On the basis of transcriptional sequencing data, a protein sequence database was established. By extracting the leaf proteins of Passion Fruit seedlings after spraying, the differential proteins produced were identified by mass spectrometry, and GO and KEGG bioinformatics were used to analyze the key proteins and the key regulatory pathways, so as to clarify the mechanism of the key proteins after chemical treatment in their related metabolic pathways.

2022-12-16 | PXD038881 |

Small RNAs from Arabidopsis plants infected with CMV-∆2b

Project description:We focused our analyses on the description of viral (CMV-∆2b) and, based on genetic and molecular evidence, classified them and discussed their relevance in antiviral defense.

2012-03-01 | GSE27477 | GEO

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