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Ustilago maydis

ABSTRACT: Bacterial communites associated to Ustilago Maydis, in different geographic regions of America.

PROVIDER: PRJNA915971 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR22894159_1.fastq.gz	Fastqsanger.gz
	SRR22894159_2.fastq.gz	Fastqsanger.gz
	SRR22894160_1.fastq.gz	Fastqsanger.gz
	SRR22894160_2.fastq.gz	Fastqsanger.gz
	SRR22894161_1.fastq.gz	Fastqsanger.gz

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mRNA profiling in Ustilago maydis under RUS (repopulation/regrowth under starvation)

Project description:mRNAs comparison between Ustilago maydis wild type grown in diluted YEPS (control) and in cell-free supernatants of Ustilago maydis wild type treated with H202 in two different concentrations (0.4% and 0.7%).

2022-06-16 | GSE205897 | GEO

Transcriptomic analysis of basidiocarp development in Ustilago maydis (DC) Dcd

Project description:Study of gene regulation basidiocarps development in Ustilago maydis using transcriptomic analysis. In 2012, Cabrera-Ponce et al. established conditions allowing a completely different developmental program in U. maydis when grown on solid medium containing Dicamba (synthetic auxin) in dual cultures with maize embryogenic calli.

2017-12-31 | GSE89025 | GEO

Maize gene expression during infection with Ustilago maydis

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Expression analysis of Pseudozyma antarctica T-34 and Ustilago maydis on different carbon source

Project description:Investigation of whole genome gene expression level in Pseudozyma antarctica T-34, compared to Ustilago maydis UM521. To clarify the transcriptomic characteristics of Pseudozyma antarctica under the conditions of high MEL production, a DNA microarray of both the strains, Pseudozyma antarctica T-34 and Ustilago maydis UM521 was prepared and analyzed the transcriptomes.

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Transcriptome-based comparison of the infection response in maize silks between Fusarium graminearum and Ustilago maydis

Project description:In this study, RNA-seq based comparative transcriptome analysis was used to study the response between Fusarium graminearum and Ustilago maydis to different growth conditions. RNA-seq libraries were generated from fungal filaments growing in culture (complete medium) and from infected maize silk. This data set contains the data for the Fusarium graminearum and Ustilago maydis medium growth condition.

2019-03-17 | E-MTAB-4562 | biostudies-arrayexpress

Comparison of extracellular vesicle and filamentous cell transcriptomes of Ustilago maydis

Project description:The coding transcriptomes of filamentous cultures of the maize smut fungus Ustilago maydis and their extracellular vesicles (EVs) were compared. Protein-coding transcripts relatively enriched in EVs versus filament cells were identified and examined to identify potentially functional mRNA cargos of U. maydis EVs.

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Transcriptional analysis of the adaptation of Ustilago maydis to grow under nitrogen fixation conditions

Project description:In this study we show the transcriptional analysis after shifting the Ustilago maydis from media with ammonium as a nitrogen source to media lacking ammonium. From these, 49 genes were up-regulated and 41 were down-regulated. The functional description and gene ontology terms associated to the diferentially expressed genes revealed that various key pathways were represented, including, secondary metabolism, the metabolism of nitrogen, amino acid, fatty acid and amino sugar, among others, suggesting that the interplay of U. maydis with its N2 fixing bacterial endosymbiont is a flexible process that may be active during the adaptation to the fungus to the different nitrogen sources, and possibly during its pathogenic style of life.

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Project description:The fungal pathogen Ustilago maydis establishes a biotrophic relationship with its host plant maize. Hallmarks of the disease are large plant tumors in which fungal proliferation occurs. Plants have developed various defense pathways to cope with pathogens. We used microarrays to detail the global programme of gene expression during the infection process of Ustilago maydis in its host plant to get insights into the defense programs and the metabolic reprogramming needed to supply the fungus with nutrients. Experiment Overall Design: In three independent experiments plants were infected with the solopathogenic U. maydis strain SG200. Samples from infected leaves were taken at 12 and 24 hours post infection, as well as 2, 4 and 8 days post infection. Samples from uninfected control plants were taken at the same time points.

2008-04-07 | E-GEOD-10023 | biostudies-arrayexpress

RNAseq of Ustilago maydis with inducible clp1 and Δcib1

Project description:Ustilago maydis strain JB1 was modified to include an arabinose inducible clp1 in the ip-locus and clb1 was deleted.

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