Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Whitebark Pine genotypes in the Sierra Nevada

PROVIDER: PRJNA917690 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22963000.fastq.gz	Fastqsanger.gz
	SRR22963100.fastq.gz	Fastqsanger.gz
	SRR22963200.fastq.gz	Fastqsanger.gz
	SRR22963001.fastq.gz	Fastqsanger.gz
	SRR22963101.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 327

Similar Datasets

Functional genomics of mountain pine beetle (Dendroctonus ponderosae) midguts and fatbodies

Project description:Survey of relative gene expression profiles in larvae, pupae, and midguts and fatbodies of teneral, unfed, and fed adult mountain pine beetles from western Nevada, USA.

2009-08-29 | GSE17858 | GEO

Functional genomics of mountain pine beetle (Dendroctonus ponderosae) midguts and fatbodies

Project description:Survey of relative gene expression profiles in larvae, pupae, and midguts and fatbodies of teneral, unfed, and fed adult mountain pine beetles from western Nevada, USA. Array prepared on 4-tile chips (4-plex custom arrays), each feature represented by six different oligonucleotides, three replicate blocks/tile, hybridized with total RNA from 11 samples, each replicated four times. Vector (pDONR222) and two plant sequences included as negative controls.

2009-08-29 | E-GEOD-17858 | biostudies-arrayexpress

Transcript profiling of Pinus sylvestris trees as a response to Heterobasidion annosum infection under field conditions

Project description:In conifer forests of Northern Europe, a pathogenic fungus Heterobasidion annosum attacks the roots of Scots pine and causes mortality. Trees with infection grow slower and produce less timber with reduced quality. Despite applied control methods, such as switching tree species to a non-host species, or stump treatment, root and butt rot continues to be a serious forest health problem. Disease resistance breeding is a less-applied control method which has potential to improve tree health. However, neither conifer genotypes with absolute resistance to Heterobasidion sp. nor robust selection markers for resistance breeding have been found. We studied the responses of various Scots pine genotypes to Heterobasidion annosum infection and mechanic damage in drained peatland. Stems and roots of mature naturally regenerated Scots pine trees growing in drained peatland were either artificially infected with H. annosum or wounded and inoculated with sterile inoculum. Untreated trees from the study sites served as controls. Responses of different Scots pine genotypes to pathogen infection as determined by lesion size were recorded from samples harvested four months after inoculation, and least susceptible and highly susceptible genotypes were selected from the study material. Analysis of terpenoids from both least susceptible and highly susceptible pine genotypes by gas chromatography coupled with mass spectrometry indicates that some monoterpenes and sesquiterpenes are differentially induced depending on the susceptibility level. Transcriptomic microarray analysis was therefore conducted with RNA from stems of the least susceptible and highly susceptible Scots pine genotypes. Gene expression data from cDNA microarray were analysed by comparisons between the treatments, and the genotypes with different resistance level. The aim of the study is to highlight transcripts specific to differing levels of susceptibility.

2019-02-01 | GSE66168 | GEO

lake water metagenome

Project description:Sierra Nevada mountain lake microbial diversity

| PRJNA601997 | ENA

Project description:Whitebark pine transcriptome profiling for understanding genetic resistance to white pine blister rust

| PRJNA352055 | ENA

Grape Bud Dormancy -Vitis vinifera

Project description:Bud endodormancy induction response of two genotypes (Seyval, a hybrid white wine grape and Vitis riparia, PI588259, a native North American grape species) was compared under long (15 h) and short (13 h) photoperiods. Proteins were extracted from both genotypes for all time points and experimental conditions. The proteins were separaed by 2D-PAGE, trypsin digested, and the peptides identified with a MALDI-TOF-TOF mass spectrometer. A master gel was made and mapped with all proteins from both genotypes. The proteins were identified by matching the peptide sequences against the 8X Vitis vinifera grape genome in NCBI. This study was funded by NSF grant DBI064755 and is the result of a collaboration between Dr. Anne Fennell at South Dakota State University and Dr. Grant R. Cramer at the University of Nevada, Reno.

2010-08-09 | PRD000169 | Pride

Project description:Ectomycorrhizal fungal communities of whitebark pine in interior British Columbia, Canada

| PRJNA722685 | ENA

Whitebark pine (Pinus albicaulis) reference transcriptome and white pine blister rust resistance

Project description:De novo transcriptome assembly of whitebark pine (Pinus albicaulis) for white pine blister rust resistance study

| PRJEB15543 | ENA

Project description:Triatomine ecology in the Sierra Nevada de Santa Marta, Colombia

| PRJNA701552 | ENA

FireSN

Project description:Metagenomics from holm-oak rhizosphere from Oak Forest in Sierra Nevada

| PRJEB35881 | ENA