Tidal marsh sparrow feathers and saltmarsh sediment
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ABSTRACT:
PROVIDER: PRJNA925448 | ENA |
REPOSITORIES: ENA
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Project description:Tidal marshes maintain elevation relative to sea level through accumulation of mineral and organic matter, yet this dynamic accumulation feedback mechanism has not been modeled widely in the context of accelerated sea-level rise. Uncertainties exist about tidal marsh resiliency to accelerated sea-level rise, reduced sediment supply, reduced plant productivity under increased inundation, and limited upland habitat for marsh migration. We examined marsh resiliency under these uncertainties using the Marsh Equilibrium Model, a mechanistic, elevation-based soil cohort model, using a rich data set of plant productivity and physical properties from sites across the estuarine salinity gradient. Four tidal marshes were chosen along this gradient: two islands and two with adjacent uplands. Varying century sea-level rise (52, 100, 165, 180 cm) and suspended sediment concentrations (100%, 50%, and 25% of current concentrations), we simulated marsh accretion across vegetated elevations for 100 years, applying the results to high spatial resolution digital elevation models to quantify potential changes in marsh distributions. At low rates of sea-level rise and mid-high sediment concentrations, all marshes maintained vegetated elevations indicative of mid/high marsh habitat. With century sea-level rise at 100 and 165 cm, marshes shifted to low marsh elevations; mid/high marsh elevations were found only in former uplands. At the highest century sea-level rise and lowest sediment concentrations, the island marshes became dominated by mudflat elevations. Under the same sediment concentrations, low salinity brackish marshes containing highly productive vegetation had slower elevation loss compared to more saline sites with lower productivity. A similar trend was documented when comparing against a marsh accretion model that did not model vegetation feedbacks. Elevation predictions using the Marsh Equilibrium Model highlight the importance of including vegetation responses to sea-level rise. These results also emphasize the importance of adjacent uplands for long-term marsh survival and incorporating such areas in conservation planning efforts.
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Project description:Tidal marshes have been recognized globally for their ability to sequester "blue carbon" but there is still a need for studies investigating the marsh response to restoration, particularly in the Pacific Northwest United States. Here we report carbon stocks and accumulation rates for restored and natural tidal marshes in the Stillaguamish River estuary in Puget Sound, Washington, where a 60-hectare marsh was reintroduced to the tidal regime from its previous use as diked and drained farmland. We found that the restoration not only maximized carbon accumulation but also enhanced resilience to rising sea levels. Four years after restoration, mean sediment carbon stocks in the upper 30 cm within the restored marsh (4.43 kg C m-2) were slightly lower than those measured in the adjacent natural marshes (5.95 kg C m-2). Mean carbon accumulation rates, however, were nearly twice as high in the restored marsh (230.49 g C m-2 yr-1) compared to the natural marshes (123.00 g C m-2 yr-1) due to high rates of accretion in the restored marsh (1.57 cm yr-1). Mean elevation change rates were nearly twice that of corresponding 210Pb accretion rates, but all were greater than the current rate of sea level rise.
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Project description:Tidal marsh and estuarine marine microbial sediment metagenomes from the Great Bay Estuary of New Hampshire were sequenced and found to be dominated by Proteobacteria, Bacteroidetes, Firmicutes, and Actinobacteria. Both types of sediment contained many unclassified bacterial sequences, including the mollusk pathogen Perkinsus marinus, and detectable xenobiotic degradation and nitrogen transformation genes.
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Project description:Salt Marsh Sediment PIE-LTER Massachusetts Raw sequence reads
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Project description:Microbial Communities of Little Sippewissett Salt Marsh Sediment
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Project description:The zebrafish embryo has repeatedly proved to be a useful model for the analysis of effects by environmental toxicants. This study was performed to investigate if an approach combining mechanism-specific bioassays with microarray techniques can obtain more in-depth insights into the ecotoxicity of complex pollutant mixtures as present, e.g., in freeze-dried whole sediment samples and their corresponding organic extracts in parallel. To this end, altered gene expression was compared to data from established bioassays as well as to results from chemical analysis. Microarray analysis revealed several classes of significantly regulated genes which could to a considerable extent be related to the hazard potential. Results indicate that potential classes of contaminants can be assigned to sediment extracts by both classical biomarker genes and corresponding expression profile analyses of known substances. However, it is difficult to distinguish between specific responses and more universal detoxification of the organism. Additionally, different gene expression was shown to be less influenced by the sampling site than by the method of exposure, which could be attributed to differential bioavailability of contaminants. Microarray analyses were performed with early life stages of zebrafish exposed to sediment extracts or freeze-dried sediment from three sampling sites (Ehingen, Lauchert, Sigmaringen) along the Upper part of the Danube River, Germany. The expression profiles were compared within the sampling sites, between the exposure scheme and to the expression pattern of model toxicants, such as 4-chloroaniline, Cadmium, DDT, TCDD, and Valproic acid (Gene Expression Omnibus Series GSE9357). Additionally, mechanism-specific bioassays and chemical analysis of the sediments have been combined and compared to the present gene expression data.
2012-12-31 | E-GEOD-31400 | biostudies-arrayexpress
Project description:Salt marsh sediment microbial community
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Project description:Salt marsh microbes in response to tidal restoration
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Project description:We investigated seminal fluid (SF) diversification in a recently diverged passerine species pair (Passer domesticus and P. hispaniolensis) using a combination of proteomic and comparative evolutionary genomic approaches. Specifically, using tandem MS/MS semi-quantitative proteomic methods we identified and compared the SF proteome of two species of Passer sparrows - the house and Spanish sparrow. This analysis revealed consistencies with known aspects of SF protein biology and function in other taxa, including the presence of a diversity of immune and antimicrobial proteins
2019-11-06 | PXD013748 | Pride