Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Metatranscriptomic sequencing of Red Sea sponge Theonella sp.

PROVIDER: PRJNA937011 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR23561550_1.fastq.gz	Fastqsanger.gz
	SRR23561550_2.fastq.gz	Fastqsanger.gz
	SRR23561551_1.fastq.gz	Fastqsanger.gz
	SRR23561551_2.fastq.gz	Fastqsanger.gz
	SRR23561552_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Project description:metagenomic sequencing of Red Sea sponge Theonella sp.

| PRJNA936841 | ENA

sponge metagenome

Project description:White Sponge Theonella

| PRJDB8537 | ENA

sponge metagenome

Project description:Red Sea cold seep sponge Suberites sp. Metagenome

| PRJNA275362 | ENA

Red Sea marine sponge

Project description:Red Sea marine sponge Metagenome

| PRJNA935148 | ENA

Project description:Genome of Poriflexus aureus in marine sponge Theonella sp.

| PRJNA681468 | ENA

sponge metagenome

Project description:Red Sea marine sponge Stylissa carteri metatranscriptomes

| PRJNA229842 | ENA

odTheSwin1.metagenome

Project description:Theonella swinhoei sponge metagenome assembly, odTheSwin1.metagenome

| PRJEB72585 | ENA

Zhang 2024 - Genome-scale metabolic modelling reveals interactions and key roles of symbiont clades in a sponge holobiont

Project description:We developed eight Genome-scale Metabolic Models for the microbiome of the sponge Stylissa sp. We also modelled metabolic interactions within the network of the eight-species microbiome by introducing different nutrients (such as HT, laurate, and a combination of both).

2024-11-13 | MODEL2407300002 | BioModels

Transcriptomic profiles of the Mediterranean sponge species Aplysina aerophoba upon wounding by the specialist grazer Tylodina perversa

Project description:In the seabed, chemical defences mediate inter- and intraspecific interactions and may determine organisms’ success, shaping the diversity and function of benthic communities. Sponges represent a prominent example of chemically-defended marine organisms with great ecological success. The ecological factors controlling the production of their defensive compounds and the evolutionary forces that select for these defences remain little understood. Each sponge species produces a specific and diverse chemical arsenal with fish-deterrent, antifouling and antimicrobial properties. However, some small animals (mesograzers), mainly sea slugs, have specialized in living and feeding on sponges. Feeding on chemically-defended organisms provides a strategy to avoid predators, albeit the poor nutritional value of sponges. In order to investigate the mechanisms that control sponge chemical defence, with particular focus on the response to specialist grazers, we investigated the interaction between the sponge Aplysina aerophoba and the sea slug Tylodina perversa. Here we performed controlled experiments and collected sponge samples at different time points (3h, 1d and 6d after treatment). To further elucidate if the sponge response is specific to grazing by T. perversa, we also included a treatment in which sponges were mechanically damaged with a scalpel. We compared gene expression between treatments based on RNA-Seq data.

2022-01-30 | E-MTAB-8601 | biostudies-arrayexpress

Transcriptome profiling of planktonic stage to biofilm stage of deep sea bacterium Pseudoalteromonas sp. SM9913

Project description:We compared genetic profiles of planktonic stage to biofilm stage of deep sea bacterium Pseudoalteromonas sp. SM9913 and revealed genetic features during switch from planktonic to pellicle stage in Pseudoalteromonas sp. SM9913.

2015-11-03 | GSE74569 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data