Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: The whole transcriptome sequencing of IBRV infection MDBK cells

PROVIDER: PRJNA941037 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR23701813_1.fastq.gz	Fastqsanger.gz
	SRR23701813_2.fastq.gz	Fastqsanger.gz
	SRR23701814_1.fastq.gz	Fastqsanger.gz
	SRR23701814_2.fastq.gz	Fastqsanger.gz
	SRR23701815_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Project description:MDBK cells under BVDV infection. Transcriptome

| PRJNA356997 | ENA

Differentially-expressed miRNAs in MDBK cells infected with bovine viral diarrhea virus compared to MDBK cells

Project description:Non-canonical microRNAs (miRNAs) are a class of short endogenous RNA molecules with the ability to control development, autophagy, apoptosis and the stress response in eukaryotes by pairing with partially complementary sites in the 3' untranslated regions (UTRs) of targeted genes. Recent studies have demonstrated that miRNAs serve as critical effectors in intricate networks of host-pathogen interactions. Thereforce, the differential expression of miRNAs were evaluated in Madin-Darby bovine kidney (MDBK) cells infected with bovine viral diarrhea virus (BVDV) NADL (100 TCID50/ 0.1 ml) for 6 h compared to normal MDBK cells using Solexa high-throughput sequencing technology (BGI, China). Examination of small RNA populations in BVDV infected MDBK cells compared to MDBK cells

2014-12-16 | E-GEOD-61251 | biostudies-arrayexpress

Transcriptome analysis of MDBK cells infected with cytopathic bovine viral diarrhea virus (BVDV)

Project description:Transcriptional profiling by array was performed to investigate differentially expressed genes (DEGs) in BVDV-infected MDBK cells and to further explore the molecular mechanism of underlying functional changes caused by infection.

2021-02-07 | GSE166288 | GEO

Transcriptome analysis of MDBK cells infected with non-cytopathic field strains of bovine viral diarrhea virus (BVDV)

Project description:Transcriptional profiling by array was performed to investigate differentially expressed genes (DEGs) in MDBK cells infected with field strains of BVDV and to further explore the molecular mechanism of underlying functional changes caused by infection.

2021-02-11 | GSE166528 | GEO

Differentially-expressed miRNAs in MDBK cells infected with bovine viral diarrhea virus compared to MDBK cells

2014-12-16 | GSE61251 | GEO

Alterations of miRNAs in MDBK cells expressing BPV-13 E5

Project description:To find out differentially expressed miRNAs in MDBK cells expressing BPV-13 E5

2019-07-02 | GSE133610 | GEO

Integrative Transcriptomic and Proteomic profiling reveals carbon metabolism and complement systems are mainly affected in Bovine Coronavirus infection in MDBK cells

Project description:Integrative Transcriptomic and Proteomic profiling reveals carbon metabolism and complement systems are mainly affected in Bovine Coronavirus infection in MDBK cells

2025-01-06 | PXD059487 |

Bos taurus

Project description:MDBK cell transcriptome

| PRJNA307293 | ENA

Analysis of global gene expressions in initial infection of Mycobacterium avium subsp. paratuberculosis using epithelial cells-peripheral blood mononuclear cells culture passage model.

Project description:Purpose: Understanding host-MAP interactions in initial stage of infection Methods: Native MAP and MDBK processed (4h) MAP were infected to bovine PBMCs. Total RNA after 24h and 72h were harvested. RNA-Seq was performed using total RNA of each group. Result: The gene expression patterns commonly activated in both groups suggest that Th17 activation is the main immunological response to MAP infection.

2020-04-29 | GSE149494 | GEO

Bioinformatic analysis of PD-1 checkpoint blockade response in severe influenza infection [miRNA-Seq]

Project description:A BALB/c mouse model of severe influenza A/H1N1 infection was constructed, and whole-transcriptome sequencing of mice treated with PD-1 checkpoint blockade before severe A/PR8(H1N1) influenza infection and IgG2a isotype control before infection were performed.

2022-01-06 | GSE192915 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data