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Proserpinaca palustris

ABSTRACT: Proserpinaca palustris Genome

PROVIDER: PRJNA946268 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR23919516_1.fastq.gz	Fastqsanger.gz
	SRR23923786_1.fastq.gz	Fastqsanger.gz
	SRR23923786_2.fastq.gz	Fastqsanger.gz
	SRR23908491_1.fastq.gz	Fastqsanger.gz
	SRR23908491_2.fastq.gz	Fastqsanger.gz

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Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris

Project description:To address the question of how photosynthetic bacterium Rhodopseudomonas palustris metabolize lignin derived compound p-coumarate, transcriptomics and quantitative proteomics were combined to characterize gene expression profiles at both the mRNA level and protein level in Rhodopseudomonas palustris grown with succinate, benzoate, and p-coumarate as the carbon source. Keywords: Comparison of transcriptome profiles

2008-05-07 | GSE6221 | GEO

Gene expression patterns of a Rhodopseudomonas palustris ΔregSR strain under photoheterotrophic growth conditions

Project description:The redox-sensing two-component signal transduction system, RegSR, in Rhodopseudomonas palustris has been shown to regulate an uptake hydrogenase in response to varying cellular redox states; however, its role is still largely undefined. Here, we used RNA sequencing to compare gene expression patterns in wild type R. palustris strain CGA010 to a ΔregSR derivative, CGA2023, under varying metabolic conditions. Growth conditions were chosen to utilize the different metabolic capabilites of R. palustris and, thus, present a variety of different redox challenges to the cell.

2021-07-31 | GSE150608 | GEO

Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris

2008-05-07 | E-GEOD-6221 | biostudies-arrayexpress

High-throughput transcriptome sequencing analysis provides insights into preliminary biotransformation mechanism of Rhodopseudomonas palustris treated with alpha-rhamnetin-3-rhamnose

Project description:In this paper, we present the first comparative transcriptome profiles with ARR treated and control of R. palustris. Moreover, putative two ARR biotransformation mechanisms in R. palustris were first given. All of these provided a valuable genomic resource for further studying molecular mechanism of biotransformation and genetic modification of R. palustris.

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Rhodopseudomonas palustris

Project description:Rhodopseudomonas palustris Genome sequencing

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Phosphoproteomic analysis of Rhodopseudomonas palustris

Project description:This study is to compare the phosphoproteome of Rhodopseudomonas palustris under photoheterotrophic and chemoheterotrophic states

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Proteomic analysis of Rhodopsedomonas palustris longevity

Project description:Proteomics analysis of Rhodopseudomonas palustris 6 and 20 days after growth arrest.

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Anaerobic degradation of syringic acid by an adapted strain of Rhodopseudomonas palustris

Project description:Rhodopseudomonas palustris strain SA008.1.07 can use syringic acid as sole organic carbon source anaerobically. Grew all anaerobically in various carbon sources: syringic acid, succinate, and p-hydroxybenzoic acid.

2019-11-25 | GSE135630 | GEO

Functional genomic analysis of three nitrogenase isozymes in the photosynthetic bacterium Rhodopseudomonas palustris

Project description:To address the question of how photosynthetic bacterium Rhodopseudomonas palustris differentially regulates gene expression of three nitrogenase isozymes (Mo, V, and Fe nitrogenases), we constructed Mo strain (Mo nitrogenase only strain), V strain (V nitrogenase only strain), and Fe strain (Fe nitrogenase only strain), and analyzed the whole genome transcriptome profiles of each mutant and wild-type cells grown under nitrogen-fixing conditions. Keywords: Genetic modification

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Quiscalus palustris

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