Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptome profiling Zebrafish Sap130b gene mutations in embryogenesis

ABSTRACT: Transcriptome profiling Zebrafish Sap130b gene mutations in embryogenesis

PROVIDER: PRJNA949798 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Transcriptome profiling Zebrafish Sap130a gene mutations in embryogenesis

Project description:Transcriptome profiling Zebrafish Sap130a gene mutations in embryogenesis

| PRJNA947958 | ENA

Transcriptome profiling Zebrafish Sap130a and Sap130b gene mutations in embryogenesis

Project description:Transcriptome profiling Zebrafish Sap130a and Sap130b gene mutations in embryogenesis

| PRJNA949794 | ENA

Transcriptome profiling Zebrafish Sap130b gene mutations in embryogenesis

Project description:This study profiled the transcriptome of zebrafish embryos harboring mutation in the Sin3A associated Protein 130b (sap130b) gene at 36 hours post fertilization (hpf). The sap130b mutant was generated via Cas9 mediated gene editing. Zebrafish sap130b mutants are viable and survive as adults with no observable phenotype. Maternal Zygotic sap130b mutants were established and they were also normal and it was reasoned that sap130a was compensating for the loss of sap130b. A transcriptome analysis was performed at 36 hpf to compare with our analysis of sap130a at this stage.

2023-05-31 | GSE228450 | GEO

Transcriptome profiling Zebrafish Sap130a gene mutations in embryogenesis

Project description:This study profiled the transcriptome of zebrafish embryos harboring mutation in the Sin3A associated Protein 130a (sap130a) gene at 36 hours post fertilization (hpf). The sap130a mutant was generated via Cas9 mediated gene editing. Zebrafish sap130a mutants are viable presumable due to the presence of maternal RNA. Generation of maternal zygotic (MZ) mutants resulted in an incomplete penetrance of heart ventricle defects that were visible as early as 36 hpf. In this experiment the MZsap130a mutant embryos were further sorted for embryos with smaller ventricle (SV) vs normal size ventricle (NV). To extend on this study and to specifically analyze the heart, sap130a mutant and WT hearts at 48 hpf were extracted for RNA-seq analysis.

2023-05-31 | GSE228057 | GEO

Transcriptome analysis of Traf6 function in early zebrafish embryogenesis

2013-12-01 | GSE42856 | GEO

Transcriptome analysis of Traf6 function in early zebrafish embryogenesis

Project description:In order to study Traf6 function during early zebrafish embryogenesis, transcriptome expression profiling was performed at 30% epiboly using a morpholino based knock-down approach. Two-factorial design with the factors 'Treatment' (5 levels:'Phenol Red', 'Standard Control', 'Mismatch', 'Morpholino1' and Morpholino 2') and 'Dose' (3 levels: 'Low', 'Middel' and 'High') with the factor 'Dose' only being applicable to the morpholino injections and not to the 'Phenol Red' control.

2013-12-01 | E-GEOD-42856 | biostudies-arrayexpress

Protein profiling of zebrafish embryos unmasks regulatory layers during early embryogenesis.

Project description:Protein profiling of zebrafish embryos unmasks regulatory layers during early embryogenesis.

| PRJNA1088158 | ENA

Comprehensive identification of long non-coding RNAs expressed during zebrafish embryogenesis

Project description:This SuperSeries is composed of the following subset Series: GSE32898: Comprehensive identification of long non-coding RNAs expressed during zebrafish embryogenesis [RNA_seq] GSE32899: Comprehensive identification of long non-coding RNAs expressed during zebrafish embryogenesis [ChIP_Seq] Refer to individual Series

2011-11-17 | E-GEOD-32900 | biostudies-arrayexpress

Dynamic landscapes and regulome of mRNA structure during zebrafish early embryogenesis

Project description:We resolved the RNA secondary structure during zebrafish early embryogenesis based on in vivo click selective 2'-hydroxyl acylation and profiling experiment (icSHAPE). We analyzed the RNA structure dynamics among different development stages. Also, we studied which factors regulate maternal gene decay by RNA structure switch.

2020-04-14 | GSE120724 | GEO

Transcriptome profiling of Arabidopsis embryogenesis in vitro

Project description:Transcriptome profiling of Arabidopsis embryogenesis in vitro

| PRJEB5944 | ENA