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Gene expression profile at single cell level of BT-549 TNBC Spheroid cultures with inducible expression of CTL or MUC1 targeting knockdown

ABSTRACT: Gene expression profile at single cell level of BT-549 TNBC Spheroid cultures with inducible expression of CTL or MUC1 targeting knockdown

PROVIDER: PRJNA958218 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR24255813_1.fastq.gz	Fastqsanger.gz
	SRR24255813_2.fastq.gz	Fastqsanger.gz
	SRR24255814_1.fastq.gz	Fastqsanger.gz
	SRR24255814_2.fastq.gz	Fastqsanger.gz
	SRR24255815_1.fastq.gz	Fastqsanger.gz

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Gene expression profile at single cell level of BT-549 TNBC Spheroid cultures with inducible expression of CTL or MUC1 targeting knockdown

Project description:The MUC1-C protein evolved in mammals for adaptation of barrier tissues to loss of homeostasis. Prolonged activation of MUC1-C in settings of chronic inflammation promotes lineage plasticity, epigenetic reprogramming and the cancer stem cell (CSC) state. The effects of MUC1-C on the metabolism of CSCs remain unexplored. We used single cell RNA sequencing (scRNA-seq) to analyze the diversity of BT-549 spheroid cultures with and without knockdown of MUC1 to examine the effects of MUC1 on CSC renewal and metbolic states.

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