Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Identification of non-native population and reconstruction of invasion routes in the Redbreast Sunfish (Lepomis auritus)

PROVIDER: PRJNA966757 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24413300.fastq.gz	Fastqsanger.gz
	SRR24413400.fastq.gz	Fastqsanger.gz
	SRR24413301.fastq.gz	Fastqsanger.gz
	SRR24413401.fastq.gz	Fastqsanger.gz
	SRR24413302.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 208

Similar Datasets

Lepomis macrochirus isolate:10149

Project description:Genome assembly of Bluegill Sunfish (Centrarchidae: Lepomis macrochirus)

| PRJNA830889 | ENA

Project description:Introgression and species delimitation in the Longear Sunfish (Lepomis megalotis)

| PRJNA660162 | ENA

Lepomis macrochirus

Project description:Heat Shock Proteins and Invasive Potential of Lepomis macrochirus (Bluegill Sunfish)

| PRJNA389292 | ENA

Comparison of transcriptomic profiles in natural populations of rodents (house mouse and black rat) along invasion routes in Senegal

Project description:We compared gene expression proﬁles between anciently and recently established populations of two major invading species, the black rat Rattus rattus and the house mouse Mus musculus musculus, in Senegal. Transcriptome analyses revealed respectively 364 and 83 differentially expressed genes along the mouse and rat invasion routes. Among them, 10 and 15% were annotated with functions related to immunity. All immune-related genes detected along the mouse invasion route were over-expressed at the invasion front. Genes of the complement activation pathway were over-represented. Results were less straightforward when considering the black rat. No particular immune pathway was over-represented. In conclusion, we revealed changes in transcriptomic profiles along invasion routes. Patterns differed between invaders. They could potentially be driven by increased infection risks at invasion front for the house mouse and trade-offs between immune responses for the black rat. Our results provide a first step in identifying the immune ecoevolutionary processes potentially involved in invasion success.

2021-04-09 | GSE112890 | GEO

Phalacrocorax auritus strain:NA

Project description:Phalacrocorax auritus

| PRJNA964974 | ENA

Podiceps auritus strain:NA

Project description:Podiceps auritus

| PRJNA965435 | ENA

Batrachostomus auritus

Project description:Batrachostomus auritus

| PRJNA920242 | ENA

Nettapus auritus strain:NA

Project description:Nettapus auritus

| PRJNA964034 | ENA

Heliothryx auritus

Project description:Heliothryx auritus

| PRJNA959596 | ENA

freshwater metagenome

Project description:Potential use of environmental DNA haplotyping for estimating the dispersal of an invasive fish, bluegill sunfish (Lepomis macrochirus), in Japan

| PRJDB17824 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data