Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Actinoplanes oblitus strain:NRRL 3884

ABSTRACT: Actinoplanes sp. NRRL 3884 Genome sequencing and assembly

PROVIDER: PRJNA978116 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR24798825_1.fastq.gz	Fastqsanger.gz
	SRR24798825_2.fastq.gz	Fastqsanger.gz
	SRR24798826_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Actinoplanes utahensis strain:NRRL 12052

Project description:Actinoplanes utahensis strain:NRRL 12052 Genome sequencing and assembly

| PRJNA262620 | ENA

Proteome Analysis of Actinoplanes sp. SE50/110

Project description:The acarviose metabolite acarbose is an a glucosidase inhibitor produced by Actinoplanes sp. SE50/110. It is medically important because it is used in the treatment of type 2 diabetes. In this work a comprehensive proteome analysis of Actinoplanes sp. SE50/110 was carried out. The associated txt and RAW files were used for two different analyses and publications. While one study focused on a comparative analysis of Actinoplanes sp. SE50/110 to elucidate differences in the proteome cultures that were grown with either maltose or glucose, the other study applied spectral counting and analyzed only the maltose-grown cultures to determine the major proteins and their location in the cell. The txt files for the comparative data are labeled as "heavy_light" and of the spectral counting data as "light". Both datasets were derived from the same RAW files.

2015-10-21 | PXD001497 | Pride

RNA-seq of coding RNA of Actinoplanes sp. SE50/110 to analyze gene function of alternative sigma factor gene ACSP50_0507

Project description:Cultivation in maltose minimal media and sampling at different time point (t2 = 96h; t3=118h; t4 = 142h; t5 = 166h) of Actinoplanes sp. SE50/110 empty vector control and Actinoplanes sp. SE50/110 ACSP50_0507 overxepression mutant. RNAseq material and methods

2024-07-22 | E-MTAB-13644 | biostudies-arrayexpress

Actinoplanes sp. KI2

Project description:Actinoplanes sp. KI2 Genome sequencing and assembly

| PRJNA886456 | ENA

Actinoplanes sp. SE50

Project description:Actinoplanes sp. SE50 Genome sequencing and assembly

| PRJNA401376 | ENA

Actinoplanes sp. TFC3

Project description:Actinoplanes sp. TFC3 genome sequencing and assembly

| PRJNA294424 | ENA

Comparative microarrays of Actinoplanes sp. SE50/110 ΔacrA with the Actinoplanes sp. SE50/110 wildtype

Project description:In order to characterize the transcriptional regulator AcrA, comparative genome wide transcriptome analyses were conducted. Therefore, the wild type Actinoplanes sp. SE50/110 and the mutant ΔacrA were each cultivated in triplicates in minimal medium supplemented with maltose or glucose as single carbon source. RNA samples from the biological replicates were taken from the middle of the growth phase of both strains in each maltose and glucose minimal medium, respectively. RNA was isolated and the three replicates were combined for each strain and condition. For each cultivation condition, the data from two arrays (dye swap) were combined to make statistically reliable conclusions.

2017-06-30 | E-MTAB-5459 | biostudies-arrayexpress

Comparative microarrays of Actinoplanes sp. SE50/110 ΔmalT with the Actinoplanes sp. SE50/110 wildtype

Project description:In order to characterize the transcriptional regulator MalT, comparative genome wide transcriptome analyses were conducted. Therefore, the wild type Actinoplanes sp. SE50/110 and the mutant ΔmalT were each cultivated in triplicates in minimal medium supplemented with maltose or glucose as single carbon source. RNA samples from the biological replicates were taken from the middle of the growth phase of both strains in each maltose and glucose minimal medium, respectively. RNA was isolated and the three replicates were combined for each strain and condition. For each cultivation condition, the data from two arrays (dye swap) were combined to make statistically reliable conclusions.

2020-04-01 | E-MTAB-8815 | biostudies-arrayexpress

The transcription dynamics in Actinoplanes sp. SE50/110 during growth.

Project description:Actinoplanes sp. SE50/110 was grown in three biological replicates in fermenter cultivation in maltose minimal medium. The transcriptomic changes during growth were monitored by sampling every 24 h. RNA-seq of all 7 replicates and a pooled RNA sample of all time points of each fermenter was performed in Paired-End mode (2x 70 nt) using Illumina HiSeq. Mapping to the reference genome (GenBank: LT825010.1) was perfromed using bowtie2 Version 2.3.2.

2020-04-01 | E-MTAB-8857 | biostudies-arrayexpress

Actinoplanes sp. TBRC 11911

Project description:Actinoplanes sp. TBRC 11911 Genome sequencing and assembly

| PRJNA627309 | ENA