Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Epiphyllous bryophyte genetic structure in fragmented forest

PROVIDER: PRJNA980239 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24828900.fastq.gz	Fastqsanger.gz
	SRR24828901.fastq.gz	Fastqsanger.gz
	SRR24828902.fastq.gz	Fastqsanger.gz
	SRR24828903.fastq.gz	Fastqsanger.gz
	SRR24828904.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 213

Similar Datasets

Trillium camschatcense

Project description:Demographic genetic structure of fragmented understory perennial plant populations

| PRJDB9287 | ENA

Project description:Network stability of bryophyte-diazotrophic metacommunity in tropical fragmented forests

| PRJNA1169898 | ENA

soil microbes in fragmented forest systems

Project description:soil microbes in fragmented forest systems Raw sequence reads

| PRJNA1163739 | ENA

Fragmented habitat compensates for the adverse effects of genetic bottleneck

Project description:Fragmented habitat compensates for the effect of genetic bottleneck

| PRJEB51012 | ENA

Project description:Genetic traces of hybrid zone movement across a fragmented habitat

| PRJNA800657 | ENA

Project description:Nyssorhynchus darlingi population genetic structure across forest cover levels in Amazonian Brazil

| PRJNA545461 | ENA

Global analysis reveals large scale dynamics of protein-RNA interaction and RNA secondary structure characteristics of Physcomitrella patens ABA response (mRNA)

Project description:Eukaryotic RNA molecules undergo multiple regulatory steps prior to being translated as proteins. Two features of post-transcriptional regulation are RNA secondary structure and RNA-binding protein (RBP) interactions with mRNAs. Here we reveal the global landscape of RBP-RNA interactions the bryophyte Physcomitrella patens undergoes as part of its response to the phytohormone abscisic acid (ABA). We show that P. patens undergoes large scale shifts in RNA secondary structure and RBP-RNA interactions as well as identify sites of RBP-RNA interaction and describe enriched motifs, among which are two purine rich sequences. We further elucidate the collection of proteins that bind to these sequences, among which are P. patens cold shock containing proteins. Together, the data suggest that P. patens undergoes a large-scale change in RNA secondary structure and RBP binding as a response to ABA and also identifies CSPs as well as several other proteins as possible regulators of that response.

2022-06-15 | GSE148422 | GEO

Global analysis reveals large scale dynamics of protein-RNA interaction and RNA secondary structure characteristics of Physcomitrella patens ABA response (PIP-Seq)

2022-06-15 | GSE148423 | GEO

Project description:Genetic resources of African mahogany in Brazil: genomic diversity and structure of forest plantations

| PRJNA1136886 | ENA

DNA sequencing of selected Globobulimina pseudospinescens organisms

Project description:We introduce FACIL (http://www.cmbi.ru.nl/FACIL), a fast, reliable tool to evaluate nucleic acid sequences for non-standard codes that detects alternative genetic codes even in species distantly related to known organisms. Results are visualized in a Genetic Code Logo. To illustrate the use of our method, we analysed several contigs derived from the mitochondrial genome of the foraminifer Globobulimina pseudospinescens. These are particularly challenging data, as the genome is highly fragmented and incomplete. Approximately 10,000 single-cell Globobulimina pseudospinescens organisms were isolated by hand from Gullmar Fjord Sweden sediment. After washing, total DNA was extracted and sequenced by Illumina sequencing. The reads were assembled using Edena. To illustrate the use of our method, we analysed several contigs derived from the mitochondrial genome of the foraminifer Globobulimina pseudospinescens, an organism without any sequenced relatives in the databases. These are particularly challenging data, as the genome is highly fragmented and incomplete.

2011-06-20 | GSE26664 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data