Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Study of microbial diversity in surface sediment from the East Siberian Sea

PROVIDER: PRJNA983761 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24916113_1.fastq.gz	Fastqsanger.gz
	SRR24916113_2.fastq.gz	Fastqsanger.gz
	SRR24916114_1.fastq.gz	Fastqsanger.gz
	SRR24916114_2.fastq.gz	Fastqsanger.gz
	SRR24916115_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 32

Similar Datasets

Project description:Microbial diversity of East Siberian Sea

| PRJNA762111 | ENA

Marine sediment microbiomes

Project description:Marine sediment microbiomes in East Siberian Sea

| PRJEB76672 | ENA

Project description:Profiling of microbial composition in sediment of East Siberian Sea

| PRJNA826966 | ENA

Project description:Profiling of microbial composition in sediment of East Siberian Sea

| PRJNA826974 | ENA

Project description:East China Sea surface sediment bacteria

| PRJNA980970 | ENA

Sediment samples of East Siberian Sea

Project description:Sediment samples of East Siberian Sea Raw sequence reads

| PRJNA753983 | ENA

Study of microbial functional structure in Xiangjiang River sediment

Project description:Xiangjiang River (Hunan, China) has been contaminated with heavy metal for several decades by surrounding factories. However, little is known about the influence of a gradient of heavy metal contamination on the diversity, structure of microbial functional gene in sediment. To deeply understand the impact of heavy metal contamination on microbial community, a comprehensive functional gene array (GeoChip 5.0) has been used to study the functional genes structure, composition, diversity and metabolic potential of microbial community from three heavy metal polluted sites of Xiangjiang River. Three groups of samples, A, B and C. Every group has 3 replicates.

2016-08-02 | E-GEOD-85064 | biostudies-arrayexpress

Study of microbial functional structure in Xiangjiang River sediment

2016-08-02 | GSE85064 | GEO

sediment metagenome

Project description:Surface sediment of Yellow Sea, Bohai Sea and north East China Sea Metagenome

| PRJNA222598 | ENA

Degradation of C30 - Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities

Project description:A significant part of the heavier petroleum fraction resulting from offshore oil-spills sinks to the deep-sea. Its fate and biodegradation by microbial communities is unclear. In particular, the physiological and metabolic features of hydrostatic pressure (HP) adapted oil-degraders have been neglected. In this study, hydrocarbon-free sediment from 1km below surface water (bsl) was incubated at 0.1, 10 and 20MPa (equivalent to surface waters, 1 and 2km bsl) using triacontane (C30) as sole carbon source for a 3-month enrichment period. HP strongly impacted biodegration, as it selected for microbial communities with small cells, high O2 respiration and nutrients requirements, but low biomass and C30-degradation yields. The alkane-degrading metaproteome linked to β-oxidation was detected but its expression was reduced under HP contrary to several housekeeping genes. This was reflected in the enriched communities, as atmospheric pressure was dominated by hydrocarbonoclastic bacteria while non-specialized or previously unrecognized oil-degrading genera were enriched under HP.

2018-12-19 | PXD004328 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data