Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptome data of Rosa rugosa root under salt treatment

PROVIDER: PRJNA987544 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25020864_1.fastq.gz	Fastqsanger.gz
	SRR25020864_2.fastq.gz	Fastqsanger.gz
	SRR25020865_1.fastq.gz	Fastqsanger.gz
	SRR25020865_2.fastq.gz	Fastqsanger.gz
	SRR25020866_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Project description:Rosa rugosa salt stress transcriptome

| PRJNA1113838 | ENA

Project description:Salt response of wild Rosa rugosa

| PRJNA752934 | ENA

Project description:Rosa rugosa flower transcriptome

| PRJNA866659 | ENA

drRosRugo

Project description:Rosa rugosa

| PRJEB62730 | ENA

Project description:Transcriptome of tomato root under salt treatment

| PRJNA1110838 | ENA

drRosRugo

Project description:Rosa rugosa, genomic and transcriptomic data

| PRJEB62729 | ENA

Project description:Rosa rugosa axillary bud transcriptome

| PRJNA886464 | ENA

Rosa rugosa

Project description:Rosa rugosa overview

| PRJNA558125 | ENA

The effect of constitutive root isoprene emission on root phenotype and physiology under control and salt stress conditions

Project description:Isoprene, a volatile hydrocarbon, is typically emitted from the leaves and other aboveground plant organs; isoprene emission from roots is not well studied. Given its well-known function in plant growth and defense aboveground, isoprene may also be involved in shaping root physiology to resist belowground stress. We used isoprene-emitting transgenic lines (IE) and a non-emitting empty vector and/or wild type lines (NE) of Arabidopsis to elucidate the roles of isoprene in root physiology and salt stress resistance. We assessed root phenotype and metabolic changes, hormone biosynthesis and signaling, and stress-responses under normal and saline conditions of IE and NE lines. We also analyzed the root transcriptome in the presence or absence of salt stress. IE lines emitted isoprene from roots, which was associated with higher primary root growth, root biomass, and root/shoot biomass ratio under both control and salt stress conditions. Transcriptome data indicated that isoprene altered the expression of key genes involved in hormone metabolism and plant responses to stress factors. Our findings reveal that root constitutive isoprene emission sustains root growth also under salinity by regulating and/or priming hormone biosynthesis and signaling mechanisms, amino acids biosynthesis, and expression of key genes relevant to salt stress defense.

2024-06-25 | GSE270516 | GEO

Gene expression profiling of Bruguiera gymnorhiza under salt stress

Project description:To identify key genes in the regulation of salt tolerance in the mangrove plant Bruguiera gymnorhiza, the transcriptome profiling under salt stress was carried out. Main roots and lateral roots were collected from the mangrove plants at 0, 1, 3, 6, 12 and 24 h, 3 6 and 12 days after NaCl-treatment. Keywords: time course, stress response, root type comparison

2008-05-01 | GSE10942 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data