Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Marine sediment metagenome

ABSTRACT: Characterization of the endospore-forming community in marine sediments from the NE Norwegian Sea and the Laptev Sea.

PROVIDER: PRJNA991075 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25132700_1.fastq.gz	Fastqsanger.gz
	SRR25132700_2.fastq.gz	Fastqsanger.gz
	SRR25132701_1.fastq.gz	Fastqsanger.gz
	SRR25132701_2.fastq.gz	Fastqsanger.gz
	SRR25132702_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 308

Similar Datasets

Biological effects of marine contaminated sediments on Sparus aurata juveniles

Project description:Chemical analysis of the compounds present in sediment, although informative, often is not indicative of the downstream biological effects that these contaminants exert on resident aquatic organisms. More direct molecular methods are needed to determine if marine life is affected by exposure to sediments. In this study, we used an aquatic multispecies microarray and q-PCR to investigate the effects on gene expression in juvenile sea bream (Sparus aurata) of two contaminated sediments defined as sediment 1 and 2 respectively, from marine areas in Northern Italy.

2011-01-01 | E-TABM-1146 | biostudies-arrayexpress

marine sediment metagenome

Project description:White Sea marine sediments prokaryotic MAGs

| PRJNA1048160 | ENA

Project description:Laptev sea

| PRJNA799175 | ENA

Project description:Laptev sea

| PRJNA715230 | ENA

marine sediment metagenome

Project description:Microbial diversity of marine sediments from Ross Sea

| PRJNA380995 | ENA

Moorella thermoacetica ATCC 39073

Project description:Endospore forming thermophilic acetogen

| PRJNA10648 | ENA

freshwater sediment metagenome

Project description:Metagenomic set of endospore genes (spo0A) from lake sediments

| PRJNA179130 | ENA

Project description:Laptev sea isolates

| PRJNA803969 | ENA

Cultivation and characterization of a novel clade of deep-sea Chloroflexi: providing a glimpse of Chloroflexi involved in sulfur cycling

Project description:The deep marine subsurface is one of the largest unexplored biospheres on Earth, where members of the phylum Chloroflexi are abundant and globally distributed. However, the deep-sea Chloroflexi have remained elusive to cultivation, hampering a more thorough understanding of their metabolisms. In this work, we have successfully isolated a representative of the phylum Chloroflexi, designated strain ZRK33, from deep-sea cold seep sediments. Phylogenetic analyses based on 16S rRNA genes, genomes, RpoB and EF-tu proteins indicated that strain ZRK33 represents a novel class within the phylum Chloroflexi, designated Sulfochloroflexia. We present a detailed description of the phenotypic traits, complete genome sequence and central metabolisms of the novel strain ZRK33. Notably, sulfate and thiosulfate could significantly promote the growth of the new isolate, possibly through accelerating the hydrolysis and uptake of saccharides. Thus, this result reveals that strain ZRK33 may play a crucial part in sulfur cycling in the deep-sea environments. Moreover, the putative genes associated with assimilatory and dissimilatory sulfate reduction are broadly distributed in the genomes of 27 metagenome-assembled genomes (MAGs) from deep-sea cold seep and hydrothermal vents sediments. Together, we propose that the deep marine subsurface Chloroflexi play key roles in sulfur cycling for the first time. This may concomitantly suggest an unsuspected availability of sulfur-containing compounds to allow for the high abundance of Chloroflexi in the deep sea.

2024-05-22 | PXD023380 | Pride

marine sediment metagenome

Project description:Sea sediments Metagenome

| PRJNA178927 | ENA