Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: WGS of Phacellanthus tubiflorus and Orobanche coerulescens

PROVIDER: PRJNA999066 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25434657_1.fastq.gz	Fastqsanger.gz
	SRR25434657_2.fastq.gz	Fastqsanger.gz
	SRR25434658_1.fastq.gz	Fastqsanger.gz
	SRR25434658_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Orobanche coerulescens

Project description:Orobanche coerulescens overview

| PRJNA1028749 | ENA

Project description:Floret of Orobanche coerulescens at different developmental stages

| PRJNA1193147 | ENA

Orobanche coerulescens isolate:Dok-Ocoe

Project description:Orobanche coerulescens isolate:Dok-Ocoe Genome sequencing and assembly

| PRJNA1028650 | ENA

Small RNAs deep sequencing from Tomato-Orobanche interaction

Project description:High-throughput sequencing of small RNAs derived from different tissues of Orobanche plants.

2022-08-01 | GSE181578 | GEO

sWGS on paired cfDNA and tissue DNA from pediatric cancer patients

Project description:We performed shallow whole genome sequencing (WGS) on circulating free (cf)DNA extracted from plasma or cerebrospinal fluid (CSF), and shallow WGS on the tissue DNA extracted from the biopsy in order to evaluate the correlation between the two biomaterials. After library construction and sequencing (Hiseq3000 or Ion Proton), copy number variations were called with WisecondorX.

2021-11-17 | E-MTAB-10548 | biostudies-arrayexpress

Whole Genome Sequencing of Tongue cancer samples and cell line

Project description:Whole genome sequencing (WGS) of tongue cancer samples and cell line was performed to identify the fusion gene translocation breakpoint. WGS raw data was aligned to human reference genome (GRCh38.p12) using BWA-MEM (v0.7.17). The BAM files generated were further analysed using SvABA (v1.1.3) tool to identify translocation breakpoints. The translocation breakpoints were annotated using custom scripts, using the reference GENCODE GTF (v30). The fusion breakpoints identified in the SvABA analysis were additionally confirmed using MANTA tool (v1.6.0).

2024-02-17 | E-MTAB-12534 | biostudies-arrayexpress

ioOrtCoer

Project description:Orthetrum coerulescens

| PRJEB74149 | ENA

Alcedo coerulescens

Project description:Alcedo coerulescens

| PRJNA919608 | ENA

Aphelocoma coerulescens

Project description:Aphelocoma coerulescens

| PRJNA919903 | ENA

Edolisoma coerulescens

Project description:Edolisoma coerulescens