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ProteomicsDirect translation of incoming retroviral genomes
Viruses that carry a positive-sense, single-stranded (+ssRNA) RNA translate their genomes soon after entering the host cell to produce viral proteins, with the exception of retroviruses. A distinguishing feature of retroviruses is reverse transcription, where the +ssRNA genome serves as a template to...
ORGANISM(S): Homo Sapiens (human) Human Immunodeficiency Virus 1 
2024-01-26 | PXD046777 | Pride
Hiv Ip-ms Silac 
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ProteomicsData-dependent acquisition based proteomic analysis of Mycobacterium fortuitum ATCC 6841
Detection of species-specific proteotypic peptides for accurate and easy characterization of infectious non-tuberculous mycobacteria such as Mycobacterium fortuitum is essential. Therefore, we carried out an in-depth global proteomic experiment using M. fortuitum ATCC 6841 strain followed by a proteo...
ORGANISM(S): Mycolicibacterium Fortuitum Subsp. Fortuitum Dsm 46621 = Atcc 6841 Bacteria 
2024-03-07 | PXD040567 | Pride
Dda Mycobacterium fortuitum Non-tuberculous mycobacteria Lc-ms/ms 
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ProteomicsData-dependent acquisition based proteomic analysis of Mycobacterium intracellulare ATCC 13950
Detection of species-specific proteotypic peptides for accurate and easy characterization of infectious non-tuberculous mycobacteria such as Mycobacterium intracellulare is essential. Therefore, we carried out an in-depth global proteomic experiment using M. intracellulare ATCC 13950 strain followed ...
ORGANISM(S): Mycobacterium Intracellulare Atcc 13950 Bacteria 
2024-03-07 | PXD040549 | Pride
Dda Non-tuberculous mycobacteria Lc-ms/ms Mycobacterium intracellulare 
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ProteomicsData-dependent acquisition based proteomic analysis of Mycobacterium abscessus ATCC 19977
Detection of species-specific proteotypic peptides for accurate and easy characterization of infectious non-tuberculous mycobacteria such as Mycobacterium abscessus is essential. Therefore, we carried out an in-depth global proteomic experiment using M. abscessus ATCC 19977 strain followed by proteom...
ORGANISM(S): Bacteria Mycobacterium Abscessus (strain Atcc 19977 / Dsm 44196 / Cip 104536 / Jcm 13569 / Nctc 13031 / Tmc 1543) 
2024-03-07 | PXD040615 | Pride
Dda Non-tuberculous mycobacteria Lc-ms/ms Mycobacterium abscessus 
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ProteomicsData-dependent acquisition based proteomic analysis of Mycobacterium kansasii ATCC 12478
Detection of species-specific proteotypic peptides for accurate and easy characterization of infectious non-tuberculous mycobacteria such as Mycobacterium kansasii is essential. Therefore, we carried out an in-depth global proteomic experiment using M. kansasii ATCC 12478 strain followed by proteome ...
ORGANISM(S): Mycobacterium Kansasii Atcc 12478 
2024-03-07 | PXD040523 | Pride
Dda Mycobacterium kansasii Non-tuberculous mycobacteria Lc-ms/ms 
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ProteomicsData-dependent acquisition based proteomic analysis of Mycobacterium avium subsp. paratuberculosis ATCC 19698
Detection of species-specific proteotypic peptides for accurate and easy characterization of infectious non-tuberculous mycobacteria such as Mycobacterium avium subsp. paratuberculosis is essential. Therefore, we conducted an in-depth global proteomic experiment using M. avium subsp. paratuberculosis...
ORGANISM(S): Mycobacterium Avium Subsp. Paratuberculosis Atcc 19698 Bacteria 
2024-03-07 | PXD040589 | Pride
Dda Mycobacterium avium Non-tuberculous mycobacteria Lc-ms/ms 
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ProteomicsReanalysis of Data-dependent acquisition based proteomic datasets of Mycobacterium smegmatis
Detection of species-specific proteotypic peptides for accurate and easy characterization of infectious non-tuberculous mycobacteria such as Mycobacterium smegmatis is essential. Therefore, we carried out reanalysis of publicly available M. smegmatis proteomic dataset PXD003303, PXD004197, PXD010020,...
ORGANISM(S): Mycobacterium Smegmatis 
2024-03-07 | PXD046063 | Pride
M. smegmatis Proteomics Non-tuberculous mycobacteria Lc-ms/ms 
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TranscriptomicsMethylation Pattern of Human Dermal Fibroblasts
In this study, we have analyzed DNA methylation changes upon aging of human dermal fibroblasts by using the HumanMethylation27 BeadChip assessing 27,578 unique CpG sites. Cells were isolated from skin samples donated by young (6-23 years) and elderly (60-73 years) patients undergoing surgical interve...
ORGANISM(S): Homo sapiens 
2012-02-14 | E-GEOD-22595 | biostudies-arrayexpress
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TranscriptomicsReplicative senescence of mesenchymal stem cells causes DNA methylation changes which correlate with repressive histone marks
Cells in culture undergo replicative senescence. In this study, we analyzed functional, genetic and epigenetic sequels of long‐term culture in human mesenchymal stem cells (MSC). Already within early passages the fibroblastoid colony‐ forming unit (CFU‐f) frequency and the differentiation potential o...
ORGANISM(S): Homo sapiens 
2011-10-27 | E-GEOD-26519 | biostudies-arrayexpress
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TranscriptomicsAffymetrix SNP array data for different passages of mesenchymal stem cells.
Cells in culture undergo replicative senescence and unequivocally stop proliferation after a limited number of cell divisions. In this study, we have expanded mesenchymal stem cells (MSC) from human adipose tissue and analyzed genetic and epigenetic sequels. The subpopulation of highly proliferative ...
ORGANISM(S): Homo sapiens 
2013-02-15 | E-GEOD-27135 | biostudies-arrayexpress
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