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Transcriptomics[E-MTAB-407] GENCODE PCR-Seq Batch II
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual a...
...arbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R Person Roles: submitter Person Last Name: Kokocinski Person First Name: Felix Person Mid Initials: Person Email: fsk@sanger.ac.uk Person Phone: -498006 Person Address: Wellcome Trust Genome Campus, Hinxton, UK Person Affiliation: Wellcome Trust Sanger Institute Person Roles: investigator Person Last Name: Hubbard Person First Name: Tim Person Mid Initials: Person Email: th@sanger.ac.uk Person Phone: -498055 Person Ad...
ORGANISM(S): Homo sapiens 
2010-12-04 | GSE25711 | GEO
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Transcriptomics[E-MTAB-533] GENCODE Targeted Sequencing Batch III
As part of the RNASeq Genome Annotation Assessment Project (RGASP) selected novel gene model prediction...
...arbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R Person Roles: submitter Person Last Name: Kokocinski Person First Name: Felix Person Mid Initials: Person Email: fsk@sanger.ac.uk Person Phone: -498006 Person Address: Wellcome Trust Genome Campus, Hinxton, UK Person Affiliation: Wellcome Trust Sanger Institute Per...
ORGANISM(S): Caenorhabditis elegans Homo sapiens 
2011-07-14 | GSE30612 | GEO
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Transcriptomics[E-MTAB-612] GENCODE PCR-Seq Batch I
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual a...
...arbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R Person Roles: submitter Person Last Name: Kokocinski Person First Name: Felix Person Mid Initials: Person Email: fsk@sanger.ac.uk Person Phone: -498006 Person Address: Wellcome Trust Genome Campus, Hinxton, UK Person Affiliation: Wellcome Trust Sanger Institute Person Roles: investigator Person Last Name: Hubbard Person First Name: Tim Person Mid Initials: Person Email: th@sanger.ac.uk Person Phone: -498055 Person Address: Wellcome Trust Genome Campus, Hi...
ORGANISM(S): Homo sapiens 
2011-07-14 | GSE30619 | GEO
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TranscriptomicsGENCODE PCR-Seq Batch II
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is batch II, based on annotation from April 2009.
ORGANISM(S): Homo sapiens 
2010-11-01 | E-MTAB-407 | biostudies-arrayexpress
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TranscriptomicsGENCODE Targeted Sequencing Batch III
As part of the RNASeq Genome Annotation Assessment Project (RGASP) selected novel gene model predictions were analysed with RT-PCR-Seq.
ORGANISM(S): Caenorhabditis elegans 
2011-03-01 | E-MTAB-533 | biostudies-arrayexpress
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TranscriptomicsGENCODE PCR-Seq Batch I
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is the RNASeq part of batch I, based on annotation from July...
ORGANISM(S): Homo sapiens 
2011-05-01 | E-MTAB-612 | biostudies-arrayexpress
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TranscriptomicsRNA-seq transcript assembly evaluation
To assess the performance of computational methods for exon identification, transcript reconstruction and expression level quantification from RNA-seq data, 24 protocol variants of 14 independent software programs (AUGUSTUS, Cufflinks, Exonerate, GSTRUCT, iReckon, mGene, mTim, NextGeneid, Oases, SLID...
ORGANISM(S): Drosophila melanogaster 
2013-07-15 | E-MTAB-1730 | biostudies-arrayexpress
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GenomicsThe GENCODE exome sequencing the complete human exome
We report the design of an extended set of targets for capturing the complete human exome, based on annotation from the GENCODE consortium. The extended set covers an addition 5,594 genes and 10.3 Mb compared to current sets which mainly target the CCDS database. The additional regions include potent...
EGAS00001000016 | EGA
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GenomicsEGAS00001000016-sc-20110221 - samples
Gencode Exome Pilot
EGAD00001000003 | EGA
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GenomicsGencode Exome Pilot
Data Access Committee EGAC00001000001
EGAC00001000001 | EGA
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