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ProteomicsCUL3(BPM) E3 ubiquitin ligases regulate MYC2, MYC3 and MYC4 stability and JA responses
The Jasmonate pathway regulators MYC2, MYC3 and MYC4 are central nodes in plant signaling networks integrating environmental and developmental signals to fine-tune jasmonate defenses and plant growth. Hence, their activity needs to be tightly regulated in order to optimize plant fitness. Among the in...
ORGANISM(S): Arabidopsis Thaliana (mouse-ear Cress) 
2021-03-19 | PXD013906 | Pride
Ubiquitination Jasmonate Myc Phytohormone Proteasome 
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Transcriptomics1.5 and 3 hours macrophage exposure
Purpose of the study The encounter between Candida albicans and phagocytes (macrophages) is considered the initial...
...rphology and proliferation of Candida albicans in human blood. Mol Microbiol. 2005 Apr;56(2):397-415. 3- Martínez-Solano L, Nombela C, Molero G, and Gil C. Differential protein expression of murine macrophages upon interaction with Candida albicans. Proteomics, in press. Keywords: stress response
ORGANISM(S): Candida albicans 
2006-10-01 | GSE4794 | GEO
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ProteomicsConserved secreted effectors contribute to endophytic growth and multihost plant compatibility in a vascular wilt fungus
Fungal interactions with plant roots, either beneficial or detrimental, have a major impact on agriculture and ecosystems1. The soil inhabiting ascomycete Fusarium oxysporum (Fo) constitutes a species complex of worldwide distribution causing vascular wilt in more than a hundred different crops2,3. I...
ORGANISM(S): Fusarium Oxysporum F. Sp. Lycopersici 4287 
2022-09-12 | PXD026400 | Pride
Fusarium oxysporum Lc-msms Apoplastic fluid 
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ProteomicsIdentification and spectral annotation of the threespine stickleback gill proteome
Gill proteome samples from four populations of threespined sticklebacks; Six biological replicates each for 4 different populations: Bodega Harbor, CA (fully plated, marine), Lake Solano (low-plated, freshwater), Laguna de la Bocana del Rosario, Mexico (low plated, brackish water, warm-adapted), Westchest...
ORGANISM(S): Gasterosteus Aculeatus (ncbitaxon:69293) 
2017-12-09 | MSV000081795 | MassIVE
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ProteomicsThe jasmonate regulome: Reconstructing a hormone signalling pathway from transcription factor activity to phenotypic outputs
We have investigated the genome regulatory network that controls responses to the hormone jasmonate in seedlings. There is much interest currently in understanding the systems-level actions of transcription factors. However, such studies can provide much greater biological insight if set in the conte...
ORGANISM(S): Arabidopsis Thaliana (mouse-ear Cress) 
2020-03-19 | PXD013592 | Pride
Arabidopsis thaliana Regulome Jasmonic acid Myc2 
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Proteomics,MultiomicsOrthogonal Organic Phase Separation protocol (2018)
Identification of RNA–protein interactions currently requires a quantity and quality of sample that precludes their widespread application, especially for dynamic biological systems or precious samples. Here, we present Orthogonal Organic Phase Separation (OOPS), a new approach to enrich RNA Binding ...
ORGANISM(S): Homo Sapiens (human) Escherichia Coli 
2018-12-17 | PXD009668 | Pride
Human Rbpome Rna-binding Oops E.coli Proteome 
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UnknownGenetic reductionist approach for dissecting individual roles of GGDEF proteins within the c-di-GMP signaling network in Salmonella.
Not available
S-EPMC2683120 | biostudies-literature
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ProteomicsAn Integrative Omics Approach Reveals Involvement of BRCA1 in Hepatic Metastatic Progression of Colorectal Cancer
The role of different cells in the tumor microenvironment (TME) is critical to the metastatic process. Phenotypic transformation of the liver cells is one of the most important stages of hepatic metastasis progression of colorectal cancer (CRC). Our aim was to identify the major molecules (i.e. genes...
ORGANISM(S): Mus Musculus (mouse) 
2020-08-27 | PXD020913 | Pride
Brca1 Tumor microenvironment Colorectal cancer Metastasis 
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UnknownElevated c-di-GMP levels promote biofilm formation and biodesulfurization capacity of Rhodococcus erythropolis.
Not available
S-EPMC8085952 | biostudies-literature
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UnknownEvaluation of a Salmonella Strain Lacking the Secondary Messenger C-di-GMP and RpoS as a Live Oral Vaccine.
Not available
S-EPMC4990191 | biostudies-literature
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