Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-GEOD-52610

ABSTRACT: ATP effect on Arabidopsis roots

OTHER RELATED OMICS DATASETS IN: PRJNA229475

PROVIDER: E-GEOD-52610 | ExpressionAtlas | 2015-05-08

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-GEOD-52610-analysis-methods.tsv	Tabular
	E-GEOD-52610-atlasExperimentSummary.Rdata	Rdata
	E-GEOD-52610-configuration.xml	Xml
	E-GEOD-52610-percentile-ranks.tsv	Tabular
	E-GEOD-52610.condensed-sdrf.tsv	Tabular

Items per page:

1 - 5 of 93

Similar Datasets

Influence of the downregulation of the ARES lncRNA (AT4G14548) on gene regulation in Arabidopsis thaliana

Project description:We analyze the effect of the downexpression of the ARES lncRNA (AT4G14548) on the transcriptome of Arabidopsis roots. 12 DAS roots were harvested and total RNA extracted for RNA sequencing.

2023-08-25 | GSE207358 | GEO

Analysis of gene expression patterns of Arabidopsis roots grown in methyl jasmonate (MeJA), cytokinin (CK), MeJA/CK- treated conditions

Project description:Purpose: Understanding of MeJA, CK effect on regulation of gene expression patterns in Arabidopsis roots

2016-07-30 | GSE80188 | GEO

Arabidopsis thaliana

Project description:ATP effect on Arabidopsis roots

| PRJNA229475 | ENA

Project description:Iron deficiency (-Fe) effect: Arabidopsis roots

| PRJNA107839 | ENA

Cell-type, developmental stage, and whole root responses to low pH and sulfur deficiency

Project description:This SuperSeries is composed of the following subset Series: GSE30091: Expression analysis of the effect of protoplasting and sorting in roots exposed to low pH GSE30095: Expression analysis of root cell types after treatment with low pH GSE30096: Expression analysis of developmental stages of Arabidopsis roots exposed to low pH GSE30097: Time-course expression analysis of the low pH (pH 4.6) response in Arabidopsis whole roots GSE30098: Expression analysis time-course of Arabidopsis roots to sulfur deficiency GSE30099: Expression analysis of root cell types after treatment with sulfur deficient media GSE30100: Expression analysis of developmental stages of Arabidopsis roots exposed to sulfur deficient media GSE30104: Genome-wide identification of SCARECROW (SCR) direct targets using a custom Agilent promoter array Refer to individual Series

2011-11-23 | E-GEOD-30166 | biostudies-arrayexpress

Root development and responses are alerted by light

Project description:Investigation of whole genome gene expression level changes in Arabidopsis roots by the effect of light. Plant growth is sustained by a continuous cell division in meristems followed by cell differentiation and elongation. We have found that in Arabidopsis thaliana roots, flavonols play a key role in regulating the transition from cell division to differentiation. Using an engineered device to grow roots in darkness, but shoot in light cycle, coupled with transcriptomic and metabolomics analysis, we deciphered that flavonols accumulation regulates proliferation-promoting levels of auxin-PLETHORA and superoxide anion (O2-). High flavonols levels restrict auxin transport and the PLETHORA gradient but also superoxide radical content, promoting an accelerated cell differentiation. Furthermore, cytokinin-SHY2 and H2O2-UPB1 pathways, which promote differentiation and, respectively, antagonize auxin and O2- activity, increase flavonols biosynthesis establishing mutual interactions among these pathways. Flavonols function as positional signals integrating hormonal and ROS pathways to determine final organ growth. This work analyze the effect of root illumination in gene transcription. Details of how plants and roots are grown are described in Silva et al. (submitted) A six chip study using total RNA extracted from three independent experiments of Arabidopsis roots growing in presence of light and three independent experiments of Arabidopsis roots growing without light.

2016-04-01 | E-GEOD-68093 | biostudies-arrayexpress

Temperature changes in the root ecosystem affect plant functionality

Project description:We have analyzed the effect of high temepratures in roots and shoots of Arabidopsis using a novel approach, since we cultivate the seedlings with the root system in a temeprature gradient, simulatinfg the soil.

2023-05-31 | GSE214280 | GEO

Arabidopsis transcriptome microarray from virus infected roots. Functional Genomic study in virus-infected plants.

Project description:au07-02_trv - arabidopsis transcriptome microarray from virus infected roots. - mRNA expression profile in virus-infected Arabidopsis. - Arabidopsis miRNA/transcriptome microarray from virus infected roots of plants. Keywords: normal vs disease comparison

2009-04-10 | GSE15558 | GEO

Root development and responses are alerted by light

2016-04-01 | GSE68093 | GEO

Arabidopsis thaliana roots: inoculated roots with a bacterium Antarctic (Pseudomonas sp, Dac-bac TI-8) vs untreated roots (control)

Project description:Transcriptional profiling of Arabidopsis thaliana roots comparing inoculated roots with a bacterial strain Antarctic (Pseudomonas sp, Da-bac TI-8) vs untreated roots (control)

2013-03-28 | GSE45559 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data