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E-MTAB-5901

ABSTRACT: RNA-seq of livers in control and Cnot1 tamoxifen-inducible liver-specific knockout mice

PROVIDER: E-MTAB-5901 | ExpressionAtlas | 2020-01-28

REPOSITORIES: ExpressionAtlas

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			Action	DRS
	E-MTAB-5901-analysis-methods.tsv	Tabular
	E-MTAB-5901-analytics.tsv	Tabular
	E-MTAB-5901-atlasExperimentSummary.Rdata	Rdata
	E-MTAB-5901-configuration.xml	Xml
	E-MTAB-5901-g6_g1-mvaPlot.png	Other

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RNA-seq of livers in control and Cnot1 tamoxifen-inducible liver-specific knockout mice

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RNA-seq of livers in control and Cnot1 tamoxifen-inducible liver-specific knockout mice

Project description:Gene expression is balanced by transcription and mRNA degradation. Shortening of polyadenosine (poly(A)) tails (deadenylation) is the initial step in the decay of most mRNAs. However, the mechanism by which deadenylation controls mRNA expression is not fully understood. This experiment aimed to determine changes in gene expression and mRNA stability in livers of control and Cnot1 tamoxifen-inducible liver-specific knockout mice. For comprehensive mRNA half-life profiling, we injected control and Cnot1 tamoxifen-inducible liver-specific knockout mice, which were placed on a tamoxifen-containing diet at 6 weeks of age for 2 weeks, intraperitoneally with 2 mg actinomycin D per g body weight for 4 and 8 hr. 1 g of total RNA was used for RNA-seq library preparation with Illumina TruSeq Stranded mRNA LT Sample Prep Kit. 109 base-pair pair-end read RNA-seq was performed with Hiseq PE Rapid Cluster Kit v2-HS and Hiseq Rapid SBS Kit v2-HS (200 Cycle) on Illumina Hiseq2500.

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ChIP-seq of livers in control and Cnot1 tamoxifen-inducible liver-specific knockout mice

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