Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-PROT-113

ABSTRACT: Analysis of skeletal muscle from a tailored pig model of Duchenne muscular dystrophy

PROVIDER: E-PROT-113 | ExpressionAtlas | 2023-12-19

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-PROT-113-MappedToGeneID.txt	Txt
	E-PROT-113-MaxQuant_Summary_ExpressionAtlas.pdf	Pdf
	E-PROT-113-analysis-methods.tsv	Tabular
	E-PROT-113-configuration.xml	Xml
	E-PROT-113-factors.xml	Xml

Items per page:

1 - 5 of 11

Similar Datasets

MicroRNAome of pig adipose and muscle tissues

Project description:Although the well-known importance of pig in agriculture, as well as a model for human biology, the miRNA catalog of pig has been largely undefined. Identification and preliminary characterization of adipose- and muscle-specific miRNAs would be a prerequisite for a thorough understanding of their roles in regulating adipose deposition and muscle growth. In the present study, we get insight into the miRNA transcriptome in eight adipose tissues, two skeletal muscles and cardiac muscle of pig using deep sequencing technology, and to elucidate their characteristic tissue-specific profiles and genomic context. Eleven small RNA libraries from eight adipose tissues, two skeletal muscle tissues and cardiac muscle of pig were sequenced.

2012-05-16 | E-GEOD-30334 | biostudies-arrayexpress

E-PROT-131

Project description:Proteomics of pig heart and skeletal muscle tissue

2023-12-20 | E-PROT-131 | ExpressionAtlas

Proteome analysis of skeletal muscle samples from a porcine model of Duchenne muscular dystrophy treated by somatic gene editing

Project description:Duchenne muscular dystrophy (DMD) is caused by genetic deficiency of dystrophin and characterized by massive structural and functional changes of skeletal muscle tissue, leading to terminal muscle failure. In this project, proteomics data from skeletal muscle of a genetically engineered DMD pig model treated by somatic gene editing are shown.

2020-02-05 | PXD014893 | Pride

Proteome analysis of skeletal muscle samples from a porcine model of Duchenne muscular dystrophy

2020-01-09 | PXD016003 | Pride

Expression data from neonatal pig skeletal muscle

Project description:Muscle development and growth is an economically important process in the pig.The neonatal period is another important stage for the pig when the most rapid gain occurring in skeletal muscle.Gene expresseion changes during fetal and postnatal skeletal muscle development that can be used to enhance pig production efficiency, as well as for comparative developmental biology using the pig as a model for other mammalian species. We used microarrays to detail the global programme of gene expression level at different stages of postnatal development. Pig skeletal muscles were selected at different stages of post-natal development for RNA extraction and hybridization on Affymetrix microarrays.So,we sampled at four time-points: within 24 hours after birth (0d),7 days after birth (7d), 14 days after birth (14d), 21 days after birth (21d).

2010-07-07 | E-GEOD-22487 | biostudies-arrayexpress

Expression data from neonatal pig skeletal muscle

2010-06-22 | GSE22487 | GEO

Expression data from longissimus dorsi muscle of Shaziling pig at 25-days old and longissimus dorsi musle of Yorkshire pig at 25-days old

Project description:To characterize the mechanism of porcine skeletal muscle development, transcriptome analysis of longissimus dorsi muscle between Shaziling and Yorkshire pig breeds

2016-06-23 | GSE70673 | GEO

An atlas of DNA methylomes in pig adipose and muscle tissues

Project description:It is evident that epigenetic factors, especially DNA methylation, play essential roles in obesity development. To learn systematic association of DNA methylation to obesity, we used pig as a model, and sampled eight diverse adipose tissues and two distinct skeletal muscle tissues from three pig breeds with distinguished fat levels: the lean Landrace, the fatty Rongchang, and the feral Tibetan pig. We sequenced 180 methylated DNA immunoprecipitation (MeDIP) libraries, generated 1,381 Gbp sequence data, and provided a genome-wide DNA methylation map for pig adipose and muscle studies. The analysis showed global similarities and differences between breeds, genders and tissues, and identified the differentially methylated regions (DMRs) that are preferentially located in intermediate CpG promoters and CpG island shores. The DMRs in promoters are highly associated to obesity development. We also analyzed methylation and regulation of the known obesity-related genes and predicted novel candidate genes. The comprehensive map here provides a solid base for exploring epigenetic mechanisms of adipose deposition and muscle growth. We collected eight diverse adipose tissues and two phenotypically distinct skeletal muscle tissues from three well-defined pig models with distinct fat rates, and studied genome-wide DNA methylation differences among breeds, males and females, and tissues.

2012-05-16 | E-GEOD-30344 | biostudies-arrayexpress

E-PROT-124

Project description:Proteome analysis of skeletal muscle samples from a porcine model of Duchenne muscular dystrophy

2023-12-20 | E-PROT-124 | ExpressionAtlas

Sus scrofa skeletal muscle degradation and deposition

Project description:a 4D-label free detection method using LC-MS/MS was employed to analyze the skeletal muscle samples from different pig breeds

2024-03-31 | PXD051115 |