Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-PROT-19

ABSTRACT: Deep proteome of HeLa, A549, HCT116, MCF7, and SHSY5Y cell lines

PROVIDER: E-PROT-19 | ExpressionAtlas | 2021-05-25

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-PROT-19-analysis-methods.tsv	Tabular
	E-PROT-19-configuration.xml	Xml
	E-PROT-19-factors.xml	Xml
	E-PROT-19.condensed-sdrf.tsv	Tabular
	E-PROT-19.idf.txt	Idf

Items per page:

1 - 5 of 15

Similar Datasets

The effects of YB1 knockdown on global gene expression in tumour cell lines.

Project description:Y-box binding factor 1 (YB1) has been associated with prognosis in many tumor types. Reduction of YB-1 inhibits tumor cell growth in vitro and in vivo Total RNA was isolated from A549, MCF7 and HCT116 tumor cell lines following 48hr treatment with 5nM Yb1 siRNA

2011-11-30 | E-GEOD-28433 | biostudies-arrayexpress

RNA-seq of a panel of human normal and cancer cell lines

Project description:We performed poly(A)+ stranded RNA-seq of a panel of human primary or transformed cell lines (BJ, IMR90, MRC5, K562, HCT116, HeLa S3, HepG2, MCF7, HEK-293, HEK-293T, 2102Ep). In parallel, we determined the genomic location and DNA methylation levels of human full-length LINE-1 elements (L1) from the same cell lines using bs-ATLAS-seq (E-MTAB-10895). To link DNA methylation and L1 expression, we used cell pellets from the same cell culture to perform both RNA-seq and bs-ATLAS-seq.

2023-09-21 | E-MTAB-12246 | biostudies-arrayexpress

5 cell lines - Deep proteome analysis of 5 cell lines (WI38, Hep2G, MCF-10A, MDA-MB-231, MCF7), using peptide isolectic focusing fractionation.

Project description:Deep proteome analysis of 5 cell lines (WI38, Hep2G, MCF-10A, MDA-MB-231, MCF7), using peptide isolectic focusing fractionation.

2015-07-20 | PXD002400 | Pride

Genome-wide identification and DNA methylation of human full-length LINE-1 (L1) retrotransposons in a panel of normal and cancer cell lines.

Project description:We used bs-ATLAS-seq to comprehensively map the genomic location and assess the DNA methylation status of human full-length LINE-1 elements (L1). The approach is focused on the youngest family (L1HS), but it also catches a significant fraction of L1PA2 to L1PA8 elements. This was performed in a panel of 12 human primary or transformed cell lines (BJ, IMR90, MRC5, H1, K562, HCT116, HeLa S3, HepG2, MCF7, HEK-293, HEK-293T, 2102Ep).

2021-12-15 | E-MTAB-10895 | biostudies-arrayexpress

Human Cell Lines Interactomics Comparison

Project description:Quantitative comparison of human cell lines (HEK293, HeLa, MCF7) using acrosslinking mass spectrometry

2024-09-16 | PXD025923 | Pride

Project description:RNA-Seq Analysis of Calotropis Gigantea leaf extract treated with Hela, MCF7 and A549 cancer cell lines.

| PRJNA604501 | ENA

Genome-wide quantification of microRNA processing efficiency from RNA-seq data

Project description:We perform polyA independent deep sequencing of chromatin associated primary transcripts across three different cell lines to obtain a global view on in vivo microRNA processing. We use these data to define a MicroProcessing Index (MPI), to quantify the cleavage efficiency of the Microprocessor complex. Hallmarks of efficient Drosha-mediated processing are confirmed by means of deep sequencing of chromatin-associated transcripts upon Drosha knockdown. Our results suggest that both sequence features and thermodynamic properties, e.g. secondary structure of the regions flanking the pre-miRNA hairpins are determinants for efficient processing. Our data furthermore enables us to observe endogenous microprocessor cleavage sites at nucleotide resolution. This analysis reveals the presence of non-canonical processing events occurring one helical turn distal of most efficiently cleaved miRNA precursors. We performed polyA independent deep sequencing of the chromatin-isolated RNA fraction for 5 samples: 2 replicates in HeLa cells, 1 Drosha knock down in HeLa cells, 1 sample for A549 cells and 1 sample for HEK293 cells. We also performed deep sequencing of the small RNA fraction in the same cell lines.

2014-04-17 | E-GEOD-56862 | biostudies-arrayexpress

E-PROT-10

Project description:Deep muscle proteome - Deep skeletal muscle proteome. Triceps muscle from C57BL6 mouse and C2C12 myotubes were measure by LC-MS.

2022-01-14 | E-PROT-10 | ExpressionAtlas

Homo sapiens

Project description:RNA-seq profiling of A549 and HCT116 human cancer cell lines

| PRJNA623750 | ENA

Homo sapiens

Project description:p53 ChIP-seq in Nutlin-treated HCT116, MCF7, and SJSA cell lines

| PRJNA340392 | ENA