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Leloup2003_CircClock_LD_REV-ERBalpha

ABSTRACT: This is model is according to the paperToward a detailed computational model for the mammalian circadian clock In this model interlocked negative and positive regulation of Per,Cry,Bmal,REV-ERBalpha genes are all involved.The model is actually robust so the initial conditions are unimportant.We gave every entity zero as initial value,and start the graph at time=132h. The simulation results in figure 8B can be reproduced by roadRunner online and Copasi. We use a ceiling function to simulate the day-light cycle. This model originates from BioModels Database: A Database of Annotated Published Models. It is copyright (c) 2005-2011 The BioModels.net Team.For more information see the terms of use.To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.

SUBMITTER: Enuo He  

PROVIDER: BIOMD0000000083 | BioModels | 2024-09-02

REPOSITORIES: BioModels

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BIOMD0000000083?filename=BIOMD0000000083-biopax2.owl Owl
BIOMD0000000083?filename=BIOMD0000000083-biopax3.owl Owl
BIOMD0000000083?filename=BIOMD0000000083-matlab.m Other
BIOMD0000000083?filename=BIOMD0000000083-octave.m Other
BIOMD0000000083?filename=BIOMD0000000083.m Other
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Publications

Toward a detailed computational model for the mammalian circadian clock.

Leloup Jean-Christophe JC   Goldbeter Albert A  

Proceedings of the National Academy of Sciences of the United States of America 20030529 12

We present a computational model for the mammalian circadian clock based on the intertwined positive and negative regulatory loops involving the Per, Cry, Bmal1, Clock, and Rev-Erb alpha genes. In agreement with experimental observations, the model can give rise to sustained circadian oscillations in continuous darkness, characterized by an antiphase relationship between Per/Cry/Rev-Erbalpha and Bmal1 mRNAs. Sustained oscillations correspond to the rhythms autonomously generated by suprachiasmat  ...[more]

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