Arnold2011_Damour2007_RuBisCO-CalvinCycle

ABSTRACT: This model is from the article: A quantitative comparison of Calvin–Benson cycle models Anne Arnold, Zoran Nikoloski Trends in Plant Science 2011 Oct 14. 22001849 , Abstract: The Calvin-Benson cycle (CBC) provides the precursors for biomass synthesis necessary for plant growth. The dynamic behavior and yield of the CBC depend on the environmental conditions and regulation of the cellular state. Accurate quantitative models hold the promise of identifying the key determinants of the tightly regulated CBC function and their effects on the responses in future climates. We provide an integrative analysis of the largest compendium of existing models for photosynthetic processes. Based on the proposed ranking, our framework facilitates the discovery of best-performing models with regard to metabolomics data and of candidates for metabolic engineering. Note: Model of the Calvin cycle with focus on the RuBisCO reaction by Damour and Urban (2007, [for PDF click here] ). The parameter values are partly taken from Farquhar et al. (1980, DOI:10.1007/BF00386231 ) and Urban et al. (2003, DOI:10.1093/treephys/23.5.289 ). The initial metabolite values are chosen from the data set of Zhu et al. (2007, DOI:10.1104/pp.107.103713 ). A detailed description of all modifications is given in the model described by Arnold and Nikoloski (2011, PMID:22001849 .

SUBMITTER: Anne Arnold  

PROVIDER: BIOMD0000000387 | BioModels | 2024-09-02

REPOSITORIES: BioModels