Arnold2011_Laisk2006_CalvinCycle_Starch_Sucrose

ABSTRACT: This model is from the article: A quantitative comparison of Calvin–Benson cycle models Anne Arnold, Zoran Nikoloski Trends in Plant Science2011 Oct 14. 22001849, Abstract: The Calvin-Benson cycle (CBC) provides the precursors for biomass synthesis necessary for plant growth. The dynamic behavior and yield of the CBC depend on the environmental conditions and regulation of the cellular state. Accurate quantitative models hold the promise of identifying the key determinants of the tightly regulated CBC function and their effects on the responses in future climates. We provide an integrative analysis of the largest compendium of existing models for photosynthetic processes. Based on the proposed ranking, our framework facilitates the discovery of best-performing models with regard to metabolomics data and of candidates for metabolic engineering. Note: Model of the Calvin cycle and the related end-product pathways to starch and sucrose synthesis by Laisk et al. (2006, DOI:10.1007/s11120-006-9109-1) and the personally provided implementation to Laisk et al. (2009, DOI:10.1007/978-1-4020-9237-4_13). A reduced version of the published model is implemented (light-dependent reactions are taken out). The parameter values are widely taken from Laisk et al. (1989, [click here for PDF]). The initial metabolite values are chosen from the data set of Zhu et al. (2007, DOI:10.1104/pp.107.103713). A detailed description of all modifications is given in the model described by Arnold and Nikoloski (2011, PMID:22001849.

SUBMITTER: Anne Arnold  

PROVIDER: BIOMD0000000392 | BioModels | 2024-09-02

REPOSITORIES: BioModels