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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Simultaneous host parasite time course analysis of mouse and the whipworm Trichuris muris to identify candidate genes for host parasite interaction

ABSTRACT: This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/. We have generated a detailed time-course of RNA-seq from caecum of mice infected with either a high or low dose of Trichuris muris parasites. The data will be used to determine gene expression profiles for each gene in both host and parasite over the course of infection, both for chronic and resolved infections. We will identify genes in host and parasite, which are correlated over the time courses more than expected by chance and use these to generate a list of candidates for host parasite interaction.

INSTRUMENT(S): Illumina HiSeq 2500

ORGANISM(S): Mus musculus

SUBMITTER:

PROVIDER: E-ERAD-337 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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