Unknown,Transcriptomics,Genomics,Proteomics

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LL-sh4/uninfected/shGFP ANOVA group


ABSTRACT: In order to identify genes with differential gene expression or alternative splicing between the groups LL-sh4, uninfected, and shGFP we study 6 hybridizations on the Human Exon 1.0 ST array using mixed model analysis of variance. 842 genes with significant gene expression differences between the groups and 1118 genes with significant exon-group interaction (a symptom of alternative splicing) were found, including 192 genes with both gene and possible splicing differences (p<0.01). Contingency table analysis of the set of studied genes and a dataset of known pathways and gene classifications revealed that the set of alternatively spliced and expressed genes were found to be significantly over-represented in groups of the GOMolFn, GOProcess, GOCellLoc, and Pathway classes (p<0.01). Algorithm ANOVA study of 6 Human Exon 1.0 ST files. Factorial arrangment

ORGANISM(S): Homo sapiens

SUBMITTER: Anjana Rao 

PROVIDER: E-GEOD-11833 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Regulation of CD45 alternative splicing by heterogeneous ribonucleoprotein, hnRNPLL.

Oberdoerffer Shalini S   Moita Luis Ferreira LF   Neems Daniel D   Freitas Rui P RP   Hacohen Nir N   Rao Anjana A  

Science (New York, N.Y.) 20080710 5889


The transition from naïve to activated T cells is marked by alternative splicing of pre-mRNA encoding the transmembrane phosphatase CD45. Using a short hairpin RNA interference screen, we identified heterogeneous ribonucleoprotein L-like (hnRNPLL) as a critical inducible regulator of CD45 alternative splicing. HnRNPLL was up-regulated in stimulated T cells, bound CD45 transcripts, and was both necessary and sufficient for CD45 alternative splicing. Depletion or overexpression of hnRNPLL in B and  ...[more]

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