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Genome-wide analysis of RB and p130 binding in human diploid fibroblasts

ABSTRACT: The action of RB as a tumor suppressor has been difficult to define, in part, due to the redundancy of the related proteins p107 and p130. By coupling advanced RNAi technology with a genome wide analysis of gene expression and RB chromatin binding, we identified a unique and specific activity of RB in repressing DNA replication as cells exit the cell cycle into senescence, a tumor suppressive program. Binding of RB was examined in growing, quiescent, senescent or senescent cells lackign RB. Binding of p130 was examined in quiescent or senescent cells in the presence or absence of RB. Libraries were prapered from DNA co-precipiated with RB or p130 specific antibodies or from mock (beads-only) immunoprecipiates.

ORGANISM(S): Homo sapiens

SUBMITTER: Agustin Chicas

PROVIDER: E-GEOD-19898 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Dissecting the unique role of the retinoblastoma tumor suppressor during cellular senescence.

Chicas Agustin A Wang Xiaowo X Zhang Chaolin C McCurrach Mila M Zhao Zhen Z Mert Ozlem O Dickins Ross A RA Narita Masashi M Zhang Michael M Lowe Scott W SW

Cancer cell 20100401 4

The RB protein family (RB, p107, and p130) has overlapping and compensatory functions in cell-cycle control. However, cancer-associated mutations are almost exclusively found in RB, implying that RB has a nonredundant role in tumor suppression. We demonstrate that RB preferentially associates with E2F target genes involved in DNA replication and is uniquely required to repress these genes during senescence but not other growth states. Consequently, RB loss leads to inappropriate DNA synthesis fo ...[more]

PMID: 20385362

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Transcription profiling of human IMR90 cells after RNAi suppression of RB, p107 or p130 using in growing, quiescent or ras-induced senescent IMR90 cells

Project description:The action of RB as a tumor suppressor has been difficult to define, in part, due to the redundancy of the related proteins p107 and p130. By coupling advanced RNAi technology to suppress RB, p107 or p130 with a genome wide analysis of gene expression in growing, quiescent or ras-senescent cells, we identified a unique and specific activity of RB in repressing DNA replication as cells exit the cell cycle into senescence, a tumor suppressive program. Experiment Overall Design: Expression profiles of IMR90 cells before and after RNAi-mediated supppression of RB, p107 or p130 in growing, quiescent or ras-induced senescent conditions. RNA was extracted from growing, low serum (0.1% FBS), confluent, or ras-senescent cells.

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Profiles and ChIP on chip experiments with dl1500 virus (expressing WT small e1a), R2G and deltaCR2 mutant viruses

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2010-10-08 | E-GEOD-12543 | biostudies-arrayexpress

Expression profiles and ChIP on chip genomewide experiments with R2G mutant virus

2008-08-26 | E-GEOD-12046 | biostudies-arrayexpress

Gene expression profiles after RNAi-mediated suppression of RB, p107 or p130 in growing, quiescent or ras-induced senescent IMR90 cells

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