Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Small RNA profiling Tomato, wild tomato relative and series of introgression lines


ABSTRACT: High throughput sequencing was used to investigate the production of small RNAs from cultivated tomato cultivar M82 and its wild relative Solanum pennellii. In order to understand the pattern of inheritance of the samll RNAs, interspecific hybrids (F1 and F2) along with series of introgressed lines comprising precise short genomic regions from S. pennellii in M82 background were used. Examination of small RNA production in several tomato lines.

ORGANISM(S): Solanum pennellii

SUBMITTER: Krys Kelly 

PROVIDER: E-GEOD-23562 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

altmetric image

Publications

Extraordinary transgressive phenotypes of hybrid tomato are influenced by epigenetics and small silencing RNAs.

Shivaprasad Padubidri V PV   Dunn Ruth M RM   Santos Bruno Acm BA   Bassett Andrew A   Baulcombe David C DC  

The EMBO journal 20111216 2


Hybrid organisms may fail to develop, be sterile or they may be more vigorous than either of the parents. Examples of hybrid vigour or hybrid necrosis in the F1 are often not inherited stably in subsequent generations if they are associated with overdominance. There can also be transgressive phenotypes that are inherited stably in these later generations, but the underlying mechanisms are not well understood. Here we have investigated the possibility that stable transgressive phenotypes in the p  ...[more]

Publication: 1/2

Similar Datasets

2012-05-29 | GSE23562 | GEO
2016-07-25 | E-GEOD-78260 | biostudies-arrayexpress
2016-07-25 | GSE78260 | GEO
2015-07-09 | E-GEOD-68018 | biostudies-arrayexpress
2013-02-13 | E-GEOD-37568 | biostudies-arrayexpress
2012-05-29 | E-GEOD-26962 | biostudies-arrayexpress
2022-02-08 | PXD029130 | Pride
2014-10-20 | E-GEOD-56974 | biostudies-arrayexpress
2013-02-13 | GSE37568 | GEO
2010-05-31 | E-GEOD-16401 | biostudies-arrayexpress