Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

JM43_Galactose_N2_AntimycinA


ABSTRACT: In previous temporal studies, we found the anaerobic response was biphasic when cells growing in galactose medium were shifted from aerobiosis to anaerobiosis, consisting of an acute, transitory phase (<60 min) followed by a more chronic but delayed phase (> 1 generation), but largely monophasic (delayed, chronic phase only) when cells were shifted in glucose medium. Gene network and functional analyses revealed the acute phase was comprised of genes associated with the retooling of metabolism (respiro-fermentative to strictly fermentative) and balancing energy supply and demand. A similar pattern of gene expression is seen when cells encounter other “environmentally stressful” conditions. However, cells shifted to anaerobiosis on glucose, in which no catabolic rearrangement is required nor change in growth rate observed, do not exhibit this pattern, suggesting the “stress” encountered is one associated with the abrupt cessation of galactose-dependent respiration and slowing of growth, not oxygen deprivation per se. In order to test this hypothesis, we added the respiratory inhibitor, antimycin A, under aerobiosis for three generations then shifted to anaerobiosis, which no catabolic rearrangement is required. Keywords: time course Sparged, fermentor cultures of a wild-type yeast strain (JM43) were aerobically grown on galactose medium (SSG-TEA) in the presence of Antimycin A for three generations. After three generations, the sparge gas was switched from air to O2-free N2 and samples were harvested after 0.04, 0.08, 0.13, 0.19, 0.25, 0.38, 0.5, 1, 2, and 3 generations of anaerobic growth in the presence of Antimycin A. Total RNA was reverse transcribed (Cy3) and hybridized against a reference (Cy5). The full time series was repeated in triplicate.

ORGANISM(S): Saccharomyces cerevisiae

SUBMITTER: Kurt Kwast 

PROVIDER: E-GEOD-3706 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

altmetric image

Publications

Comparison of the transcriptomic "stress response" evoked by antimycin A and oxygen deprivation in Saccharomyces cerevisiae.

Lai Liang-Chuan LC   Kissinger Matthew T MT   Burke Patricia V PV   Kwast Kurt E KE  

BMC genomics 20081223


<h4>Background</h4>Acute changes in environmental parameters (e.g., O2, pH, UV, osmolarity, nutrients, etc.) evoke a common transcriptomic response in yeast referred to as the "environmental stress response" (ESR) or "common environmental response" (CER). Why such a diverse array of insults should elicit a common transcriptional response remains enigmatic. Previous functional analyses of the networks involved have found that, in addition to up-regulating those for mitigating the specific stresso  ...[more]

Similar Datasets

2008-12-31 | E-GEOD-3705 | biostudies-arrayexpress
2008-12-31 | GSE3706 | GEO
2008-12-31 | GSE3705 | GEO
2016-11-01 | E-MTAB-4520 | biostudies-arrayexpress
2018-03-31 | E-MTAB-6602 | biostudies-arrayexpress
2011-05-05 | PRD000192 | Pride
2011-05-05 | PRD000193 | Pride
2011-05-05 | PRD000191 | Pride
2017-11-22 | GSE98442 | GEO
2014-09-25 | PXD000886 | Pride