Unknown,Transcriptomics,Genomics,Proteomics

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Transcriptome analysis of Thermotoga maritima under multiple growth conditions [tiling array]


ABSTRACT: Investigation of transcripts (boundary, level, etc.) across the entire T. maritima genome in mulitple growth conditions, including logphase, late exponential, heat shock and hydrogen inhibited conditions. The new genome annotation has been approved by Genbank [CP004077, pending release of the manuscript]. A fourteen array expression profiling study was performed using total RNA from four distinct growth conditions collected under maltose minimal media.

ORGANISM(S): Thermotoga maritima MSB8

SUBMITTER: Haythem Latif 

PROVIDER: E-GEOD-37391 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications


The generation of genome-scale data is becoming more routine, yet the subsequent analysis of omics data remains a significant challenge. Here, an approach that integrates multiple omics datasets with bioinformatics tools was developed that produces a detailed annotation of several microbial genomic features. This methodology was used to characterize the genome of Thermotoga maritima--a phylogenetically deep-branching, hyperthermophilic bacterium. Experimental data were generated for whole-genome  ...[more]

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