Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Aspirin Exposure Reveals Novel Genes Associated with Platelet Function and Cardiovascular Events (outpatient cardiology)


ABSTRACT: Background: Identifying individuals at heightened cardiovascular risk is a priority for reducing the global burden of cardiovascular disease. Aspirin is widely used to prevent cardiovascular events, though with variable results. Therefore, we hypothesized that aspirin exposure would reveal novel biological pathways relevant to the development of cardiovascular events. Methods: We administered aspirin, followed by peripheral blood RNA microarray profiling, in a discovery cohort of healthy volunteers (n = 50, HV1), followed by two validation cohorts of healthy volunteers (n = 53, HV2) or outpatient cardiology (OPC, n = 25) patients, in conjunction with platelet function testing with the platelet functions score (PFS, HV1 and HV2) or the VerifyNow Asprin (VN, OPC) test. Sets of coexpressed genes, or “Factors” were identified via Bayesian sparse factor analysis and associated with platelet function in HV1 and validated in HV2 and OPC. Validated factors were associated with death/MI in observational (n = 191) and case:control (n = 447) patient cohorts with available RNA data collected at the time of cardiac catheterization. Results: Factor analysis yielded 20 Factors, of which one, Factor 14, contained 60 genes and was associated with PFS in HV1 (r = -0.31, p-value = 0.03). Factor 14 was associated with platelet function with the same strength and direction in HV2 (r = -0.34, p-value = 0.02) and OPC (one-sided p-value for aspirin resistant vs. aspirin sensitive = 0.046), thus validating the association. Factor 14 was associated with death/MI in the two patient cohorts, odds ratio (OR) = 1.2, 95% CI [1.02-1.4], p-value = 0.01 and hazard ratio = 1.5, [1.2-1.9], p = 0.001, respectively, independent of known cardiovascular risk factors (combined OR = 1.2, CI = [1.02, 1.4], p = 0.03). Factor 14 and the expression of the Factor 14 transcript most highly correlative of PFS, ITGA2B, improved reclassification compared to traditional risk factors (category-free net reclassification index = 31% and 37%, p ≤ 0.0002 for both). Conclusions: By challenging humans subjects with aspirin, a medication used for cardiovascular risk reduction, we elucidated genes and pathways that may underlie platelet function and mechanisms responsible for cardiovascular death/MI. This accession represents the OPC cohort microarray data 26 subjects selected for microarray analysis were divided into three groups: aspirin resistant (AR, n=8, >550 ARU), high normal (HN, n=9, ARU 500-549) and aspirin sensitive (AS, n=9, ARU<500)

ORGANISM(S): Homo sapiens

SUBMITTER: Deepak Voora 

PROVIDER: E-GEOD-38511 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

altmetric image

Publications

Aspirin exposure reveals novel genes associated with platelet function and cardiovascular events.

Voora Deepak D   Cyr Derek D   Lucas Joseph J   Chi Jen-Tsan JT   Dungan Jennifer J   McCaffrey Timothy A TA   Katz Richard R   Newby L Kristin LK   Kraus William E WE   Becker Richard C RC   Ortel Thomas L TL   Ginsburg Geoffrey S GS  

Journal of the American College of Cardiology 20130703 14


<h4>Objectives</h4>The aim of this study was to develop ribonucleic acid (RNA) profiles that could serve as novel biomarkers for the response to aspirin.<h4>Background</h4>Aspirin reduces death and myocardial infarction (MI), suggesting that aspirin interacts with biological pathways that may underlie these events.<h4>Methods</h4>Aspirin was administered, followed by whole-blood RNA microarray profiling, in a discovery cohort of healthy volunteers (HV1) (n = 50) and 2 validation cohorts of healt  ...[more]

Publication: 1/2

Similar Datasets

2013-12-06 | GSE38511 | GEO
2016-02-18 | E-GEOD-66426 | biostudies-arrayexpress
2016-02-18 | E-GEOD-66427 | biostudies-arrayexpress
2019-03-14 | MSV000083572 | MassIVE
2016-02-18 | GSE66427 | GEO
2016-02-18 | GSE66426 | GEO
2016-02-22 | PXD001861 | Pride
2024-06-30 | GSE232027 | GEO
2011-07-01 | E-GEOD-25716 | biostudies-arrayexpress
| PRJNA168570 | ENA